Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_2660 |
Symbol | |
ID | 3906333 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | - |
Start bp | 3141254 |
End bp | 3141946 |
Gene Length | 693 bp |
Protein Length | 230 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 637879985 |
Product | peptide deformylase |
Protein accession | YP_481751 |
Protein GI | 86741351 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.729564 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0430884 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGTGC TCCCGATCCG CACCGTTGGT GATCCCGTTC TGCGCACTCC GACCACGCTG GTCACGGAGT TCGACACTGC GCTCGGTCGG CTGGTCACCG ACATGATCGA CACCATGTAC GACGCGCCCG GGGTGGGGCT TGCCGCCCCG CAGATCGGGG TCGGGCTGCG CCTGTTCGTC TTCGACGTCG ACTACGACCC GCGTGACGAG TCGGTACCAC GGGTGCCGCG GGTGGTGGTG AACCCGGTGC TGGAACTCGG CCCGGACCCG GGGCGGCCCG GGGAGACCCA GCGGCCTGGC GGGATCCAGC GGTCCGGGGA GACCCAGCGG TCCGGGGAGA CCCAGCGGTC CGGGGAGACC CAGCGGTCCG GGGAGACCCA GCAGCACGGC CCGGAGGGAT GCCTGTCCGT CCCGGGGCTG CACTTCCCGA CCACGCGGGC GCTGGCCGCG CGGGTCCGCG GGGTGGACGT TACGGGGCAG CCGGTCGAGT ACGCCGGCGA GGGCCTGCTT GCGCGCTGCT TCCAGCACGA GGTCGACCAT CTCGACGGGA TCCTCTACGT CGACCGGCTG ACCGGGGAGG CGCGCCGTGC CGCCGTCCAG GCACTGCGCG AGCCGCCGCC GACCCCGGAG CAGGCACGGG CGGCCGGCGA GTACCTGCGG TCGCTGCGCC GGTCAGCCGG GTCGGTCCGG TGA
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Protein sequence | MTVLPIRTVG DPVLRTPTTL VTEFDTALGR LVTDMIDTMY DAPGVGLAAP QIGVGLRLFV FDVDYDPRDE SVPRVPRVVV NPVLELGPDP GRPGETQRPG GIQRSGETQR SGETQRSGET QRSGETQQHG PEGCLSVPGL HFPTTRALAA RVRGVDVTGQ PVEYAGEGLL ARCFQHEVDH LDGILYVDRL TGEARRAAVQ ALREPPPTPE QARAAGEYLR SLRRSAGSVR
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