Gene Francci3_2528 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_2528 
Symbol 
ID3904672 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp2989666 
End bp2990505 
Gene Length840 bp 
Protein Length279 aa 
Translation table11 
GC content69% 
IMG OID637879856 
Productsigma-24 
Protein accessionYP_481622 
Protein GI86741222 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATTC TGGAGCGCTT CACGCAGGCA CGCCCTCGGC TGCTACGGCT CGCATACAGC 
GAGCTCGGTG ACCTCGGCGA GGCCGAAGAA GTGGTCCAGG ATGCCTGGCT GCGGCTCGCG
CGCGCGGACC ACGCGGCAAT CGAGAACCTG GATGGCTGGC TGACCACGGT CGTCGCTAGG
CTCGCCCTTG ATCGCCTCCG GTCCGCTCGG GCGCGCCGCG AGATCTACGT CGGCCCGTGG
CTCCCAGAGC CGCTCGGGTC GGGTGACCCG GCAGACCGTG TCACGCTCGA CGAATCCGTC
AGCTACGCCT TGCTAGCGGT GCTCGAGCAG CTCTCACCGG CGGAACGCAC GGCGTTCGTG
CTGCACGACG TGTTCGACAT ACCGTTCGGC GAGGTCGCCG AGGTGGTCGG CCGCACGCCC
GAGGCAGTGC GGCAGCTCGC GGCGCGTGCC CGCCGCCACG TCAGGCGCGA GCACTCGCGT
TTCGTGGCCT CGGGTGAGGA GCACGATCGC GCCGTACGGG CGTTCGCGCT GGCAGTGGCC
GAGGGCGACC TCGGCGGTCT CCTCGCCGTT CTCGACCCGG ATGTCGTCTG GAGGTCGGAT
GGCGGCGGTC ACGCGGTAGC GGCACGCAGA CCGCTGCACG GCGACATTCG GGTCGCGCGA
GCATGGGTGG CGCTTAGCCG CAGGCTCGAC CACCCGATCG AGACCACGCT CAACGGGCAA
CTCGGGCTGG TGATCCCGAG TCACGACGGC CACCGCGCAG CGCTTTCGTT CGCGGTGAGT
GACAATCGGA TCACGCGCAT CGACGTGGTC CGCAATCCGG AGAAGCTGCG ACGAATCTGA
 
Protein sequence
MTILERFTQA RPRLLRLAYS ELGDLGEAEE VVQDAWLRLA RADHAAIENL DGWLTTVVAR 
LALDRLRSAR ARREIYVGPW LPEPLGSGDP ADRVTLDESV SYALLAVLEQ LSPAERTAFV
LHDVFDIPFG EVAEVVGRTP EAVRQLAARA RRHVRREHSR FVASGEEHDR AVRAFALAVA
EGDLGGLLAV LDPDVVWRSD GGGHAVAARR PLHGDIRVAR AWVALSRRLD HPIETTLNGQ
LGLVIPSHDG HRAALSFAVS DNRITRIDVV RNPEKLRRI