| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2513 |
|---|
| Symbol | groEL |
|---|
| ID | 3904657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 2969278 |
|---|
| End bp | 2970927 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637879843 |
|---|
| Product | chaperonin GroEL |
|---|
| Protein accession | YP_481609 |
|---|
| Protein GI | 86741209 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02348] chaperonin GroL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.167914 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGG ATCTGCGGTT CAATGTCGAG GCGCGCCGCC TGCTGGAGGC CGGGGTCAAT
GCCCTGGCGG ACGCCGTCAA GGTGACTCTG GGTCCAAAGG GCCGCAACGC CGTCATCGAA
AAACTGACCG GGCCGCCCAC CATCACCAAT GACGGTGTGA CCATAGCCAG GGAGATCCAG
CTGCGTAACC CCTTCGCCAA CATGGGGGCG CAACTGGTCA AGGAGGTCGC GACCAAGACC
AACGGCACTG CCGGCGACGG AACCACCACC GCCACCGTGC TCGCGCAGGC CCTCGTCCGG
GAGGGTCTGC ATGCCGTGGA CGGGGGCGCC AACCCGATGT TTCTCAAGAA CGGCATCGAG
GCTGCCGTGG CCGCCCTGCT AGAGGAGTTT GAAAAGTACC GGGGAGAGGT CGAGGGCGAG
GCCGATCTTG CCCGGGTGGC GACCCTCGCC GCCAACAACG ATGCCCGGAT CGGCGACGTC
GTGGCCGCGG CCCTTGGCCG GGTCGGCTGC GACGGGGTGG TCACGGTCGA GGAATCCCCG
ATCTTCGGAC TCGAGGTCAG CTTCGTGGAC GGTATCGAGT TGGACAACGG GTACCTCTCG
CCGTACATGG TCACCGACAC CGAGCGGATG GAGGCCGCCT ACACCGACCC CTACATCCTG
TTGACCAACG AGAAGATCTC TCAGGTTCAG ACCCTGATGC CGGTCCTCGA GCTGGTCACC
CGGGCCGGCG GCCAGTTGAT CGTCTTCGCG GAGAACGTCG AGGGACCGGC ACTGGGCATG
CTGGTCGCCA ACAATGTGCA CGGGACCTTC CGGTCCGCGG TGGTCCGGGC ACCCGGTTTC
GGTCACCGTC GGTTGGCCGA GCTCAACGAT CTCGCGGTTT TTCTGGGCGG TCAGGTGATT
ACCGCGGATG CCGGGCTTTC CCTGGACCGG GTCACCCTCG GCCAGCTCGG GCGTTGCAAG
AAGGCCACCA TTACCGAGCA TGCGACTACG ATCGTCGACG GCGCCGGTTC CGCCACCGAG
ATCCATGCCC GGATCGACCA GCTCAAGCGG GAGCTTGAAC GGGCGGAGAA CCCCCACGAC
CAGGACACGT TGCAGACCCG GATCGCCCGG TTGTCCGGCG GCGTCGCGGT GATCCGGGTC
GGCGCCGTGA CCGGTGTGGA GTTGAAGGAG AAGCTGCACC GGGTCGAGGA CTCCCTCGCG
GCGGCACGGG CTGCTCTCGC CGAAGGTGTC GTGGCGGGCG GTGGTACCGC ACTGCTGCAA
GCGGCCTCGG CCCTTGACAA GCTCACGCTG ACCGGCGACG CCGCCGAAGG CAGGGAGATC
GTTCGGCGGG CCATCGCCGA ACCACTGCGC TGGATCGCGA TCAACGCCGG CTACGACGGC
GACGAAGTGG TCAAGCGGGT CGCCGAGCTG CCGCGCGGTC ACGGTTTCAA CGCCGCGACC
GGAGAATACG GGGAGATGGC CGGCTTCGGT GTCATCGACC CGGTGAAAGT TACCCGTTGC
GCGCTGCAGA GCGCGGCGTC GATCGCCGCG CTGTTGCTGA CAACGGAAAC CCTGGTTGTC
GAGGAGGTCA TCGGCAACCC GGGTGCCGTG ATCGCTCCCG GATTCGGGGA TCTCGCGGAG
GGCCTGGTCC GGCCTTCCAA CATCGCCTGA
|
|---|
| Protein sequence | MAKDLRFNVE ARRLLEAGVN ALADAVKVTL GPKGRNAVIE KLTGPPTITN DGVTIAREIQ
LRNPFANMGA QLVKEVATKT NGTAGDGTTT ATVLAQALVR EGLHAVDGGA NPMFLKNGIE
AAVAALLEEF EKYRGEVEGE ADLARVATLA ANNDARIGDV VAAALGRVGC DGVVTVEESP
IFGLEVSFVD GIELDNGYLS PYMVTDTERM EAAYTDPYIL LTNEKISQVQ TLMPVLELVT
RAGGQLIVFA ENVEGPALGM LVANNVHGTF RSAVVRAPGF GHRRLAELND LAVFLGGQVI
TADAGLSLDR VTLGQLGRCK KATITEHATT IVDGAGSATE IHARIDQLKR ELERAENPHD
QDTLQTRIAR LSGGVAVIRV GAVTGVELKE KLHRVEDSLA AARAALAEGV VAGGGTALLQ
AASALDKLTL TGDAAEGREI VRRAIAEPLR WIAINAGYDG DEVVKRVAEL PRGHGFNAAT
GEYGEMAGFG VIDPVKVTRC ALQSAASIAA LLLTTETLVV EEVIGNPGAV IAPGFGDLAE
GLVRPSNIA
|
|---|
| |