| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2495 |
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| Symbol | |
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| ID | 3904873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 2944039 |
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| End bp | 2945838 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637879825 |
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| Product | thiamine pyrophosphate protein |
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| Protein accession | YP_481591 |
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| Protein GI | 86741191 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.215575 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.718329 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACAGG TCGCGGACTA TGTCCTGCAG CGGTTGACCG GCTGGGGTGT TCACCGCATA
TTCGGCTATC CCGGGGACGG CATCAACGGC TTCCTCGGGG CTTTCGACCG GGCCGGCGGT
GATCCTGGGT TCCTGCAGAC CCGGCACGAG GAGATGGCGG CGTTCATGGC CTGCGCGCAC
GCCAAGTTCA CCGGTGAGGT AGGCGCGTGT GTCGCGACCT CCGGCCCGGG GGCGATCCAT
CTGCTCAACG GTCTCTACGA CGCCCGGCTC GACCATCAGC CGGTGCTGGC GATCGTCGGC
CAGCAGCGGC GGACCTCCCT CGGCGCCCAC TACCAGCAGG AAATCGATCT GATCTCGCTG
TTCAAGGACG TCACCGAGTA CGTGCAGTAC TGCATGGCCC CGCCCAGCGC CCGTCATCTC
GTCGATCGGG CGATGAAGAC AGCGCTGTCC AGCCGGGCGC CGGTCTGCCT GATCTTCCCG
GAGGATGTCC AGGAGGAGAA GTACACCGAG CCTCCGCATG AGCACGGGGC GGTGCGGACC
AGCATTGGCT GGACGAAACC ACGCATCCTG CCGGATCCGG ACGAGGTGCG CCGCGCCGCC
GCCGTGCTGA ATCGGGGCCG CCGGGTGGCG ATGTTGATCG GGCAAGGGGC GGCCGGCGCC
CGCGAGGAGG TGACGGAGGC CGCCGACCTG CTCGGCGCGG GTGTCGCCAA GGCCCTGCTC
GGCAAGGATG CGCTCCCCGA TACCCTGCCG TTCGTGACCG GCCCCATCGG GCTGCTCGGC
AGCGAAGCCA GCCACAAGAT GGTGATGGGC GCCGACACGC TCCTCCTGGT CGGGACGAGC
TTCCCCTACT CGGAGTGGCT GCCGCGGGAG GGCCAGGCCG CCGGCGTCCA GATCGATATC
GACGGCCGGA TGATCGGTAT TCGTTATCCG ATGGATGTTC ATCTCGTCGG CGACGCGGCC
GAGACGCTGC GCCAGTTGAT TCCCCTGCTC ATCCGCAAGG AGGACCGTTC CTGGCGGCGG
TTCATCGAAC GGGAGGTGGC GACCTGGCAG CGGGTGCTGG CGGACCGGGC CAGGCTGCGG
GCGGATCCGA TGAACCCGCA GATCGTCGCG TACGAGTTGG ACAAGCGACT GCCCGATAAC
GCGATCCTCA CCGCGGACTC CGGGTCGGCG ACCACCTGGT GGGCCCGTTA CCTGCGCATC
CGTGGGGACA TGAAGGCGTC GTTGTCGGGA ACCCTGGCGA CCATGCTGCC CGGAGTGCCC
TACGCGGTGG CGGCGAAGCT GGCCTATCCG GAACGACCGG TGATCGCGTT CGTCGGCGAC
GGGGCGTTCT CGATGCTGGG CATGAACGAG CTGTTCACGG TCAAGCGGTA CTGGGAGAGG
ATGAACACCG ATCCGCGGCT GGTGTTCACC GTGTTCGTGA ACGAGGACCT CAACCAGGTC
TCCTACGAGC AGCGGGTGAT GGCGGGTGAT CGGATCAATG TCGAGACGCA GAAGATCCCG
TATGTGCCGG CGGCGGATTT CGCCCGGCTC CTCGGTTTCA CCGGGATCCG CTGCGACTCG
CCGGACAAGA TCGGTGCCGC GTGGGAACAG GCGCTGGCTG CGGACCGGCC GGTTGTGCTT
GAGGTCGTTG TCGACGCGAA GGTGCCGCCG CTGCCGCCGC ACGTCCGGCC CGAGCAGATG
CGCAAGACCG CCCGGGCGTT CCTGCAGGGC GACCCAGAGG CCGTCGGCAT CGCCGTGCAG
GGCTTCAAGG GCAAGTGGCA GGAGGCGAGG GAGCACCTCC CGCACGCCGC CCGCAGGTAG
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| Protein sequence | MSQVADYVLQ RLTGWGVHRI FGYPGDGING FLGAFDRAGG DPGFLQTRHE EMAAFMACAH
AKFTGEVGAC VATSGPGAIH LLNGLYDARL DHQPVLAIVG QQRRTSLGAH YQQEIDLISL
FKDVTEYVQY CMAPPSARHL VDRAMKTALS SRAPVCLIFP EDVQEEKYTE PPHEHGAVRT
SIGWTKPRIL PDPDEVRRAA AVLNRGRRVA MLIGQGAAGA REEVTEAADL LGAGVAKALL
GKDALPDTLP FVTGPIGLLG SEASHKMVMG ADTLLLVGTS FPYSEWLPRE GQAAGVQIDI
DGRMIGIRYP MDVHLVGDAA ETLRQLIPLL IRKEDRSWRR FIEREVATWQ RVLADRARLR
ADPMNPQIVA YELDKRLPDN AILTADSGSA TTWWARYLRI RGDMKASLSG TLATMLPGVP
YAVAAKLAYP ERPVIAFVGD GAFSMLGMNE LFTVKRYWER MNTDPRLVFT VFVNEDLNQV
SYEQRVMAGD RINVETQKIP YVPAADFARL LGFTGIRCDS PDKIGAAWEQ ALAADRPVVL
EVVVDAKVPP LPPHVRPEQM RKTARAFLQG DPEAVGIAVQ GFKGKWQEAR EHLPHAARR
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