| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2463 |
|---|
| Symbol | |
|---|
| ID | 3905075 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 2904047 |
|---|
| End bp | 2905093 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637879793 |
|---|
| Product | FMN-dependent alpha-hydroxy acid dehydrogenase |
|---|
| Protein accession | YP_481559 |
|---|
| Protein GI | 86741159 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1304] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.283428 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.44924 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCGT TGACGCTCGG CGACTACGAG AACCTGGCCC GCGCCCGGCT GGACCGTCTG
GTCTGGGACT TCTGCGCGGG CGGCGCCGGG GAGGAACGGA CGCTCACGGC TAACATGGCG
GCATTCGACG ACGTCCGGCT GCGGCCAACC GTGCTGCGCG GCGCGTCCGA CCCCGACATC
GCCACCAGGA TCTTCGGTGA CCGGTGGGCG GCGCCGCTGG CTGTCGCCCC GATGGCCTTC
CACACGCTGG CTCACCCAGA TGGGGAACTG GCCACGGTGC GGGCCGCCAC CTCGGTCGGG
ATGCCCGTCG TCGTCTCCAC CATGGCCGGG CGCCGCTTCG AGGAGCTGGT CTCGGCCGCA
GGCTCCCCGC TGTGGCTCCA GGTGTACTGC TTCCGTGACC GCTTCCGGAC GCAGCGGCTG
ATCGAACACG GGGAGCGGGC GGGCATGAAT GCGCTGGTCC TCACCGTTGA CGCGCCCCGG
CTTGGCCGCC GGCTGCGCGA CGTGCGCAAC GACTTCCGGC TGCCTCCGGG TATCATGCCG
GTCAACCTCG ACGGGGATGG CTTCTCCTCG CCCGCCGCGC ACGCCAGCGC CGAGCTCGAC
CCGACCCTGG ACTGGTCGGT GATCGACTGG CTGCGGTCGA TCAGCTCGTT GCCGCTGCTG
GTCAAGGGCA TCCTGACGGC CTCGGACGCG GAACGGGCGG TACGTGCGGG GGTGGACGGC
ATCGTGGTCT CCAACCACGG GGGCCGCCAG CTTGACGGTG TCCCCGCGAC CTTCGAGGTA
CTCCCGGAGA TCGTGGCGGC GGTGGCGGGC AGTTGCCCGG TCCTGGTCGA TGGTGGCATC
CGGCGGGGCC GGGACGTGCT GGCCTGCCTG GCGGTGGGGG CCGCCGCGGT GCTCGTGGGT
CGGCCAGTCC TCCATGGCCT GGCGGTCGGC GGGCAGGAAG GCGCAGCTCA TGTGCTGGGC
ATTCTCATCG AGGAACTCAC CGACGCGATG ACCCTCACCG GCACACCTTC GCTGGCCGAC
ATCCATCCCG GCCTCATTGG GCACTGA
|
|---|
| Protein sequence | MTALTLGDYE NLARARLDRL VWDFCAGGAG EERTLTANMA AFDDVRLRPT VLRGASDPDI
ATRIFGDRWA APLAVAPMAF HTLAHPDGEL ATVRAATSVG MPVVVSTMAG RRFEELVSAA
GSPLWLQVYC FRDRFRTQRL IEHGERAGMN ALVLTVDAPR LGRRLRDVRN DFRLPPGIMP
VNLDGDGFSS PAAHASAELD PTLDWSVIDW LRSISSLPLL VKGILTASDA ERAVRAGVDG
IVVSNHGGRQ LDGVPATFEV LPEIVAAVAG SCPVLVDGGI RRGRDVLACL AVGAAAVLVG
RPVLHGLAVG GQEGAAHVLG ILIEELTDAM TLTGTPSLAD IHPGLIGH
|
|---|
| |