| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2449 |
|---|
| Symbol | |
|---|
| ID | 3905061 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 2845258 |
|---|
| End bp | 2846097 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637879779 |
|---|
| Product | alpha/beta hydrolase fold |
|---|
| Protein accession | YP_481545 |
|---|
| Protein GI | 86741145 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0045755 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.669691 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGTGG CTCGGATCAA CGGGATCAAC CTGAGCTTCG ATGACTACGG CGTGGGAGCG
CCGGTCCTCC TGGTCACCGG GACGGGAGCC CCCGGGCGCG TCTGGCGGAC CCACCAGGTG
CCGGCGCTGC GAGCCGCGGG CTACCGCGTC ATCACGATGG ACAACCGGGG CATTCCGCCC
TCCGACGCCG GGCCTGAGGG GTTCACGCTG GCCGACATGG TGGCCGACAC CGCCGCCCTC
ATCGAGCATC TGGGCGTCGA GGGCTGCCGG GTTGTGGGCT TCTCACTCGG CGCCATGATC
GTGCAGGAGC TGCTCGTCGC CCGGCCCCGG TTGGTCGGGC AGGCCGTGCT GATGGCGACC
CGCGGCAGGT CCGACGCGCT GGCCACCGCC ATGTCCCTAG CCGAAATAGA GCTGTACGAC
AGCGGTGTCA CGGTACCTGC GCGTTATGCG GCTTTCATGC ATGCGCTGCA GAGCCTCTCG
CCGCGTACGC TCAACGACGA ACGGCAGATC AGGGACTGGC TCGACGTCTT CGAGGTCTCC
GCGGTGACCC TCTCGGCGGC CCGCGGCCAA CTGGGCCTGG AACTCATCCC CGACCGCCGG
CCGGGCTTCG CGCATATCCA GTGCCCCTGT CTGGTGATCG GCTTCCAGGA CGACCTGATA
GTCCGTCCAC CGCTGTGCCG CGAAGTCGCC GAGGCCATCC CGGGAGCCAC CTACGAAGAA
ATTCCGGGCT GCGGCCACTA CGGCTACCTG GAACGCCCCA CCGAAGTGAA CTCGGCCATT
CTGGGCTTCT TTGCTCGGCA AACGACCGGC GCAGTGCCCG GTCAGGTCAT CGTCACGTAG
|
|---|
| Protein sequence | MPVARINGIN LSFDDYGVGA PVLLVTGTGA PGRVWRTHQV PALRAAGYRV ITMDNRGIPP
SDAGPEGFTL ADMVADTAAL IEHLGVEGCR VVGFSLGAMI VQELLVARPR LVGQAVLMAT
RGRSDALATA MSLAEIELYD SGVTVPARYA AFMHALQSLS PRTLNDERQI RDWLDVFEVS
AVTLSAARGQ LGLELIPDRR PGFAHIQCPC LVIGFQDDLI VRPPLCREVA EAIPGATYEE
IPGCGHYGYL ERPTEVNSAI LGFFARQTTG AVPGQVIVT
|
|---|
| |