| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2397 |
|---|
| Symbol | |
|---|
| ID | 3906380 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 2775069 |
|---|
| End bp | 2777252 |
|---|
| Gene Length | 2184 bp |
|---|
| Protein Length | 727 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 637879727 |
|---|
| Product | putative ATP/GTP binding protein |
|---|
| Protein accession | YP_481493 |
|---|
| Protein GI | 86741093 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3973] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.115029 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0547233 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGACG GCATGAACGC CGAACCGGAT GCGGATCCGG TCGACCTGGC CGTCGATGTG
GCTGTCGATG TGGCCGGACC GGACGCGGAG CTGGCCGCGG AACGCGAGCA CCTCCGGCGC
AGCCGGCGGG CGCTGGCGGG GATGCGGGCC GAGGTCGAGG GAACGGAGAT TGCCGCGGGC
GACGCGGTCG TGGACAAGGT GACGAACGCC TACCTGAAGC TGGCGAAGCA ACGGCGGCTC
GCCAGCTTCA CCGAGCAGGA GCATTCGACG CCGCTGTTCT TCGGCCGGGT CGACTACGGG
CCCGACGCGC CCCGGGGCCC CGGCCAGCGC TTCTACCTCG GGCGGCGGCA CGTGCGCGAG
GCTGCCGGGG ACGATCCGCT GGTCGTCGAC TGGCGCACCG AGGTCGCCCG GCCGTTCTAC
CGGGCGCATC CGGGCGACCC GATGGGGCTC ACGGTCCGAC GCAGGTTCGG CTACGACGGG
GCGGAGCTCA CCGCGTTCGA GGACGAACCG CTCATCCCCC GCCGCTCGGG GGCGGGGACG
GCGGCGGGAG AGCCGGCGGC GGCGGGAGAG CCGGCGGGGG AGGCGACCGG GCCGGCCGGC
GACCTGCTGG ACCGGGAGAT CGAACGGCCC CGCACCGGGC CGATGCGCGA CATCATTGCG
ACGATCCAAC CCGAGCAGGA CGAGATCGTC CGGGCGGATC TCGCCGTGAG CGTGTGCGTC
CAGGGCGCCC CGGGGACGGG AAAGACCGCC GTGGGGCTGC ACCGGGCCGC CTATCTGCTC
TACGCCCACC GTGAGCAGCT GCGGCGCTGC GGGGTACTCG TCGTCGGCCC CAACCGCGCC
TTCCTCGGCT ACATCGCCGC GGTGCTGCCC TCCCTCGGGG AGTTCACGGT GCGGCACAGC
ACCCTCGACG ACGTGGTGGG CGCGGTCGCC GTGCGCGGCA CGGACCCCGA CGACGTGGCC
GCGCTCAAGG GCGACGCCCG GATGGCGACG GTGATCCGTC GGGCGTTGCA CGGGGCGATC
CGCCCGCCCA CCCGGCCGGT CTCCGTGGAC ACCCGGGTCG GCCGGTGGAC GGTCGGCGCC
GACGAGTTCG TGGACCTGGC CGCCGACCTG ATCGCGCAGC TGGGCGCGGG CGCGTTGCGC
TACGGTACCG CCCGGGCACG CCTGGCCGGC CGGATCGCCG AGTCTGTCCG TCGCCGGGCC
GAGGCGAGCG GACACTTCTT CACCGACGGG GCGCTGCGCA CCCTCGCCCG CGGCCGGGCC
GTCCGCGAGG CCGTCGAGGC GGTCTGGCCG CGGGCCGACG CGCCGGGCCT GGTGCACCGC
CTGCTCACCG ACCCGGCGTT CCTGGCGTCG GCGGCCGACG GGGTGCTCAC CGACGACGAA
CAGCGCCTGC TGCTGACCGG CGCACCGCGG GGCGGGGTCC GGACGGCGCG CTGGTCGCTC
GCCGACGCGT TCTGCGTCGA TGAGGCCCGG GACCTCATCG AGAGCGGACC GGGCTTCGGG
CACGTGATCA TCGACGAGGC GCAGGACCTC TCCGCGATGC AGTGCCGCGC GCTCGGCCGC
CGCTGCGCGG ACGGCTCCGC CACCGTCCTC GGGGACATCG CCCAGGGCAC CACCAGCTGG
GCCGCGACCT CGTGGCCGAC GTTGCTGGCC CATCTCGGCA AACCCACGGC GCACCTGGAG
GTGCTGACCC GCGGTTACCG GGTGCCCGCG GAGATCCTCG ACTTCGCGAA CCGGCTCCTG
CGCCACATCG CCCCGGATCT GCGTCCGGCG ACCTCGGCGC GGACCACGCG CGGCGCGCTG
ACGACGGCCC CAACCACCCC GCAGGGGCTC ACCGCCGCGG TGGTCGACCA CACCCGCCGG
ACCCTGCCGC ACCCCGGCTC GCTGGCGATC ATCGTCGCCG ACCGGGAGGT GGCGGCACTC
GCGGCGGCGC TGGACGCCGC GCGGCTGCCG ATGCCGATCG TCCCGCTCGA CGGGGACACC
CCACCCGGGC GGGCCTGCCT CGTGCCCGCC TCGCTCGCCA AGGGACTGGA GTTCGACCAT
GTCATCGTGG TGGAACCCGC CGCGATCGTG GCGGGTGAGG CGTGGCTGTT GCAGGGGTTG
CGCCGGCTCT ATGTCGTCCT CACCCGCGCC GTGAGCGCCC TCACCGTCGT GCACGCCGAC
GCGCTGCCCG CACAGCTGCG GTGA
|
|---|
| Protein sequence | MIDGMNAEPD ADPVDLAVDV AVDVAGPDAE LAAEREHLRR SRRALAGMRA EVEGTEIAAG
DAVVDKVTNA YLKLAKQRRL ASFTEQEHST PLFFGRVDYG PDAPRGPGQR FYLGRRHVRE
AAGDDPLVVD WRTEVARPFY RAHPGDPMGL TVRRRFGYDG AELTAFEDEP LIPRRSGAGT
AAGEPAAAGE PAGEATGPAG DLLDREIERP RTGPMRDIIA TIQPEQDEIV RADLAVSVCV
QGAPGTGKTA VGLHRAAYLL YAHREQLRRC GVLVVGPNRA FLGYIAAVLP SLGEFTVRHS
TLDDVVGAVA VRGTDPDDVA ALKGDARMAT VIRRALHGAI RPPTRPVSVD TRVGRWTVGA
DEFVDLAADL IAQLGAGALR YGTARARLAG RIAESVRRRA EASGHFFTDG ALRTLARGRA
VREAVEAVWP RADAPGLVHR LLTDPAFLAS AADGVLTDDE QRLLLTGAPR GGVRTARWSL
ADAFCVDEAR DLIESGPGFG HVIIDEAQDL SAMQCRALGR RCADGSATVL GDIAQGTTSW
AATSWPTLLA HLGKPTAHLE VLTRGYRVPA EILDFANRLL RHIAPDLRPA TSARTTRGAL
TTAPTTPQGL TAAVVDHTRR TLPHPGSLAI IVADREVAAL AAALDAARLP MPIVPLDGDT
PPGRACLVPA SLAKGLEFDH VIVVEPAAIV AGEAWLLQGL RRLYVVLTRA VSALTVVHAD
ALPAQLR
|
|---|
| |