| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2361 |
|---|
| Symbol | |
|---|
| ID | 3904568 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 2735443 |
|---|
| End bp | 2737239 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 637879691 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_481457 |
|---|
| Protein GI | 86741057 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.210389 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.401092 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACGGCC GCGGGCCGGT CCTGCCCTGG GTGATCCTCG GCGGCCTGTG GGGCAGCATC
GGCGTCGGCT GGCTGGCATG GATGACCGTC CGCCTGGCGG CCGTCGTCGG GGGCGGCCAT
CCACCGGCGT TCGGCGCGTT CGTCACCGCC GTGCTCGCCG GCGACGCCAC CCGGGCCACC
GGCGCAACCC CGGCCGGGTG GGTTGTGGTG TTCGCCGTGC TGGCCCTCGC CGCCGCCACC
GCCCTGGCCG TCGTCGCCGT GCGCGCCGTG CGCCGGGCAC GGCGGCGTCG GCGCCGCTCG
GCACCCTGGC GGCTTGCCCT GCCCTCCCTC GCCGACCCGG CCGACCTGGC CACGCTCACC
CCTGCCGGCG CCGCCGACCG TGCCCGCGCG CTGCGCCCCT CCCTGTCGGA TGCCGATGCC
CGCCGGCTCG GTGACGACGC CGGCCTGCTC CTCGGTGACC TGCTGCCCCG CGGGCTGCCG
CTACGCGCAT CCTGGGAGGA CGTGCTCCTG GCGGTCATGG CTCCCCGGGC CGGGAAAACC
ACGGCGCTGG CGATCCCGAT GACCCTCGCC GCGCCGGGCC CGGTACTCGC CACCGGCAAC
AAGGCCGACC TGTGGGCCGC CACCGCACAG GTGCGGGCCG GCGACGGCCG CCGGGTGTGG
ACGTTCGACC CGCAGGCCAT CGCCCACGCC CCCCAGACCT GGTGGTGGAA CCCGCTCGCC
GCCGTGCACG CCGTCGAGGA CGCCGACCGG CTCGCCGGGC ATTTCCTCCA GGAGATCCGC
GGGGAGAAAA CCGGCGGGGA CTTCTGGCAG GCCGCCGCCG GGGACCTGCT CGCCGCCCTG
TTCCTCGCCG CCGCCACCAG CGGGCGCACC CTGCTCGACG TCTACGAATG GCTCAACGAC
TCCGCCAGCC CCGTCCCCGC CGAACTCCTC GCCGCCGGCG GCTACCCGGC CGTCGCCGCC
GGGCTGCGCG GACGGCAGGC CGGGGCACCG GAAACCCGTG AAGGTGTCTA CGAAACCGCC
CGCGCCGCCG CCCGCTGCCT GCGTAACGAC CGGATCCTCG CCTGGGTCAC CCCCGGCCAC
ACCGACCGCC GCCTCGACGT GGCCGCGATC CCGGCCGGCC GCGACGTGCT GCACCTGCTG
TCCAAGACCG ACGAAGGTGC CGCCTCCCCG CTGGTCGCCG CGCTGACCGA CCAGATCGTC
CGCGCGGCCG TCGTCGCCGC CGAACGTTCC GGTGGCCGCC TCGACCCGCC GCTCGCCCTC
GTCCTCGACG AAGCCGCGAA CATCTGCAAG ATCGCCGATC TGCCCGACCT GTACTCCCAT
CTCGGCAGCC GCGGCATCGT CCCCCTGACG ATCCTGCAGT CCTACCGCCA GGGCGTGCGC
GTGTGGGGCG AGGCCGGCAT GGACGCCCTG TGGTCGGCGG CCACCATCAA AATCATCGGC
GCGGGGATCG ACGACCCGCG CCTCGCCGAG GACCTCTCCC GCCTCGTCGG CGACCACGAC
GTCGACACCA CCTCGGTCAC CCGCTCCGCC CAGGGCGCCT CGTCGACCAT CTCCAGCCGC
CGCCAGCGCA TCCTGGAGGC CGCCGACATC CGCGCCATCC CCAAAGGCCG CGCGCTGCTG
CTCGCCACCG GCTCCCGCAT CGCCGCGATC GCCCTGCGCC CCTGGTACAC CGGCCCCCGC
GCCACCGAGA TCACCGCCGC CATCCGTACC GCCGAAGCCA CCCTGACCGC CCGCGCCACC
GGCGCCCACC CCGCCGGCGA GGAGGAGACC GATGACAGCC CCCTCACCCA CCTCTGA
|
|---|
| Protein sequence | MNGRGPVLPW VILGGLWGSI GVGWLAWMTV RLAAVVGGGH PPAFGAFVTA VLAGDATRAT
GATPAGWVVV FAVLALAAAT ALAVVAVRAV RRARRRRRRS APWRLALPSL ADPADLATLT
PAGAADRARA LRPSLSDADA RRLGDDAGLL LGDLLPRGLP LRASWEDVLL AVMAPRAGKT
TALAIPMTLA APGPVLATGN KADLWAATAQ VRAGDGRRVW TFDPQAIAHA PQTWWWNPLA
AVHAVEDADR LAGHFLQEIR GEKTGGDFWQ AAAGDLLAAL FLAAATSGRT LLDVYEWLND
SASPVPAELL AAGGYPAVAA GLRGRQAGAP ETREGVYETA RAAARCLRND RILAWVTPGH
TDRRLDVAAI PAGRDVLHLL SKTDEGAASP LVAALTDQIV RAAVVAAERS GGRLDPPLAL
VLDEAANICK IADLPDLYSH LGSRGIVPLT ILQSYRQGVR VWGEAGMDAL WSAATIKIIG
AGIDDPRLAE DLSRLVGDHD VDTTSVTRSA QGASSTISSR RQRILEAADI RAIPKGRALL
LATGSRIAAI ALRPWYTGPR ATEITAAIRT AEATLTARAT GAHPAGEEET DDSPLTHL
|
|---|
| |