| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2288 |
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| Symbol | |
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| ID | 3904822 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 2668112 |
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| End bp | 2669722 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 637879619 |
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| Product | Fis family transcriptional regulator |
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| Protein accession | YP_481385 |
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| Protein GI | 86740985 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00288923 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000159352 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCCAAA CTGAGACACG CGCGGCCGTG CCAGGGACGA GGCTGGCGCC TACGCTTATG
ACCTGGATCA CAGCGGGGCT TTCAGGGAGT GTCATGCCCG ACGACGTCAT CCCGGCACGT
GCCCGCGGGT TCGCGGCCGA GGCGCGCGCG GGGCGCGACC ACACCCGGTC GGACGTCTCC
TGCCGGCTGA TGGCCTCCTG GCAGCGCAGC GAGGAGTACG GCGTCTCCCT CGACGACGTC
GACCCGGTCT TCTCCGGCAC GATCGACCAG AGCTCGCTGT TCTACGACAG CGGCCGCGAG
GTGCTGGCCA GCCTCCACCG GACGCTGGCC GCGGAGCCCG TCAGCCTGAT GTTGACCGAC
GCGGACGGCT TGGTGCTCAA CCGTCTCAGC GGGGACACCA GCCTCCTGCG CGCGCTGGAC
CGGGTCCACC TCGCGCCGGG CTTCTCCTAC GCCGAGCGGG TGGTGGGTAC GACGGGACTC
GGGCTCGCGC TGGCGGACCG CGCCCCGTCC CTGGTGCGGG CCGAGGAGCA CTACGCCGTC
GGGCTGTGCT GCTACACCTG CGCCGCGGCG CCGGTGCTCC ACCCAGGGAC CGGACGCCTC
GAGGGCTCGG TCAACCTGAC GACCTGGTCG GAGTCGTCGA GCAACCTGCT GCTCGCGCTG
GCTGAGTCCG CCGCGCAGCA CACGACGGAC CTGATGCGGT TGCGGTCCGG GGGCGTCACG
GGTGGCCGCC CGCGCCCACG CGGCGAGGTG TTCCGGGTGG AAAGCCCGCG CGCGGAGCCC
GGGGCCGGCA GTCTGCACGA CCTCTCCGGC TCCTGGCGCC GTGCGGTGTC ACTGGCAGAG
GCGGGCCTGC GCGACGGGCG GGTCGTGGCC TGTGTCGGCG AGCCGGGCAG TGGCCGTACG
ACGGCGCTCG CGCAGGCCCT GCGCCGGGCC TTTCCGCGCT ACCGCATCCT GGCCGCGAGC
AACCCGGCAG CGGCGGACGT CGAGCCGTGG CTGTCCCTGT GGACCCCGGA GCTGACGAAG
GCGAGCACGG CGGTCATCGT GCGCGACGTC GACCTGCTCC CCCTGTGGGT GGCCGAACAG
GTGCGGGACC GGGTGCTCAG GGCCCGGGTC GAGGCGCGAT CGGGCGCAGC CGACCCGGCG
GGCTGCCTAC CCTTCGTGAT CACGGTAGAG CGGTTCGAGG ATATCCCGGC CGCACTGCGC
GCGATCGTTG ACGGGATCGT CCCGGTCGCA CCGCTGCGCC AACGGCCCGA GGACATCGGG
CCGTTGGCGC GGGTGGCGGC CCTGCGGGCA CGGGGCCGCG AGGTGGATCT GACCCCGGCG
GCCGAACGCG CCCTGTCCGA CCATCGTTGG CCGGGCAACG TCGAGCAGCT GATGCAGGTC
GTCAAGAAAC TGGCTCGCCG CCACGACCCG ATCGACGTCG GACACCTCCC GGCCGAGGTG
CTCTCGCACG GCCGCCACCG GCTGACGCGA CTGGAGACGT TCGAGCGGGA CGAGATCGTG
CGGGCTCTGA ACGACCCGTC CCTCACCATG GCCGAGGCAG CCGAGCGGGT CGGCCTGAGC
CGGTCCACGC TCTACCGGCG GATCGCCCAG TACGGCATCC GGGTCAGGTA G
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| Protein sequence | MSQTETRAAV PGTRLAPTLM TWITAGLSGS VMPDDVIPAR ARGFAAEARA GRDHTRSDVS
CRLMASWQRS EEYGVSLDDV DPVFSGTIDQ SSLFYDSGRE VLASLHRTLA AEPVSLMLTD
ADGLVLNRLS GDTSLLRALD RVHLAPGFSY AERVVGTTGL GLALADRAPS LVRAEEHYAV
GLCCYTCAAA PVLHPGTGRL EGSVNLTTWS ESSSNLLLAL AESAAQHTTD LMRLRSGGVT
GGRPRPRGEV FRVESPRAEP GAGSLHDLSG SWRRAVSLAE AGLRDGRVVA CVGEPGSGRT
TALAQALRRA FPRYRILAAS NPAAADVEPW LSLWTPELTK ASTAVIVRDV DLLPLWVAEQ
VRDRVLRARV EARSGAADPA GCLPFVITVE RFEDIPAALR AIVDGIVPVA PLRQRPEDIG
PLARVAALRA RGREVDLTPA AERALSDHRW PGNVEQLMQV VKKLARRHDP IDVGHLPAEV
LSHGRHRLTR LETFERDEIV RALNDPSLTM AEAAERVGLS RSTLYRRIAQ YGIRVR
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