Gene Francci3_2248 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_2248 
Symbol 
ID3905016 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand- 
Start bp2624634 
End bp2625302 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content73% 
IMG OID637879579 
ProductTetR family transcriptional regulator 
Protein accessionYP_481345 
Protein GI86740945 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0660336 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones6 
Fosmid unclonability p-value0.0152181 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCGACCG TGTCCTTCAG CCTCGAAAAA CCGCCGCCAG CAGGATCGCG CCGGGAGCGT 
ATCCTCGCCG CCGCGGCCCG GTTGATGGCC GAGCGCGGGT ACCACGGGGT GAGCATCAAC 
GACATTGGCC GGGCCGCGGG CGTCTCCGGG CCGGCGTTGT ACAAGCATTT CCCGAGTAAG 
CAGGCGATCC TCGGCGAACT GCTGATCGGC ATCAGTGAAC GCCTGCTCGC CGAGGGCACC 
CGTCGCGCGG CCGCGGCGCC CAGTCCGGAC GGCACGCCCA GTCCGGACGG CACGCCCAGT 
CCGGACGGCA CGCTGGACGC GCTCGTGCGC TGGCACGTCT CCTTCGCTCT CGACTCACCC 
GAACTGATCC GTATTCATGA TCGCGACCTG ACCAGTATGA ACCCGGCCGA CGCGCGCACC 
GTGCGCCGGC TGCAACGCGG CTACGTCGAG CTCTGGGTCG CCCAGCTGCG CGCCCGCAGC 
CCCGAACTCG CCGAGGGCAC CGCCCGCGCC GCCGTCCACG CCACCTTCGG CCTGCTGAAC 
TCCACCCCCT ACAGCGCGGT GACGATGAGT CGGCCGCAGC TGGCGGACCT GCTGCACCGG 
CTCGGCCTGG CCGCCCTGCT CGCCGCGGGA GCGCGGCGCC CGGCACCCGG GCCGGCCGCC 
ACCCGCTGA
 
Protein sequence
MPTVSFSLEK PPPAGSRRER ILAAAARLMA ERGYHGVSIN DIGRAAGVSG PALYKHFPSK 
QAILGELLIG ISERLLAEGT RRAAAAPSPD GTPSPDGTPS PDGTLDALVR WHVSFALDSP 
ELIRIHDRDL TSMNPADART VRRLQRGYVE LWVAQLRARS PELAEGTARA AVHATFGLLN 
STPYSAVTMS RPQLADLLHR LGLAALLAAG ARRPAPGPAA TR