| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2165 |
|---|
| Symbol | |
|---|
| ID | 3906765 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 2535260 |
|---|
| End bp | 2536795 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637879498 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_481264 |
|---|
| Protein GI | 86740864 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.708059 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGGTGC CTTTCGGCGC ACGTGATTTC CTTGATCGAG CGGTCACGGT GTATGGCAGA
CGTGTCGGTG TCGTGGACGA ACCGGACCAG CCCGCCCAGC CGTGGCCGGA CCTGACCTAC
GCCCGCCTGG GTGAGACCGC CCGTGCGCAG GCGGCGGGCC TGGACGCCTT AGGCGTGGGC
CACGGTGAGC GCGTCGCGAT CGTGTCGCAT AACAGTGCCC GCCTGCTCGC GTCGTTCTTC
GGTGTCAGCG GGTACGGCCG GGTGCTCGTC CCGGTGAACT TCCGTCTCTC GCCGGAGGAG
GTCAGCTACA TCGTCGAGCA CTCCGGCTCC GAGGTGCTGC TCATCGACCC CGAGCTGGAG
GAGAAGCTCT CCGGCGTGAC CGCGAAGCAG AAGTTCGTGC TGGGCGCCGA GAGTGACGCC
GAGCTCTACC GCTTCGACGC CGAGCCCACG CCGTGGGAGC CGGATGAGAA CGCCACCGCC
ACGGTCAACT ACACCAGCGG TACGACCGCG CGCCCCAAGG GCGTGCAGAT CACCCACCGC
AACATCTGGG TCAACGCGGT CACCTTCGCG CTGCACGCCG GTGTCACCGA TCGCGACGTC
TACCTGCACA CGCTGCCGAT GTTCCACGCC AATGGCTGGG GCATGCCGTT CGGCATGACC
GGTCTCGGCG TCCAGCAGGT GGTGCTGCGC AAGATCGACG GCCCGGAGAT CCTGCGCCGC
GTGGAGCAGC ACGGCGTCAC CGTGATGTGC GCCGCGCCGG CTGTGGTCAA CGCCGTGCTC
GACGCCGTCC GGGACTGGGA CGGCGAGGTC CCCGGCCGCG ACCGCGTGCG GGTCATCTGC
GCGGGTGCTC CGCCGCCCAC CAAGACGATC CAACGGGTCG AGGAGGAGCT CGGCTGGGAG
TTCATCCAGA TTTACGGCCT CACCGAGACC TCGCCGCTGC TCACGATCAA CCGTTCCCGC
GTGGAGTGGG ACGACCTGCC GCCCGAGGAT CGCGCGGGCA AGCTCGTCCG TGCGGGTGCG
CCCGCTCTGG GTGTCACGCT CAAGCTCTCA GACTCCGGTG AGGTGCTGGC TCGCTCCAAC
GTGATCTTGG CGGGCTACTG GGAGCGGCCG CAGGAGTCGG CCGGGGCCCT GGCGGGCGGC
TGGTTCCACA CCGGTGACGG CGGCGTGATC GACGACGAGG GCTACCTGAC GATCAGTGAC
CGCAAGAAGG ATGTGATCAT TACCGGCGGT GAGAACGTCT CGTCGATCCA GGTCGAGGAC
TGCCTGTTCG GCCACCCGGC AGTGGCCGAG GTCGCGGTGA TCGGCGTGCC CGACGAGAAG
TGGGGTGAGG CGATCAAAGC GCTGGTCGTG CTCGCCGAGG GCCGGACGGC GACCGAGGCG
GAGCTGATCA AGCACTGCAA GGAGCGGCTC GCCTCCTACA AGGCGCCCAC CTCGGTGGAG
TTCCGCGACC AGCTTGCCCG CACCGCCACC GGCAAGCTGC AGAAGTTCAA GCTGCGCGCC
CCGTACTGGG AGGGCCACGA GCGCCAGGTC GACTGA
|
|---|
| Protein sequence | MLVPFGARDF LDRAVTVYGR RVGVVDEPDQ PAQPWPDLTY ARLGETARAQ AAGLDALGVG
HGERVAIVSH NSARLLASFF GVSGYGRVLV PVNFRLSPEE VSYIVEHSGS EVLLIDPELE
EKLSGVTAKQ KFVLGAESDA ELYRFDAEPT PWEPDENATA TVNYTSGTTA RPKGVQITHR
NIWVNAVTFA LHAGVTDRDV YLHTLPMFHA NGWGMPFGMT GLGVQQVVLR KIDGPEILRR
VEQHGVTVMC AAPAVVNAVL DAVRDWDGEV PGRDRVRVIC AGAPPPTKTI QRVEEELGWE
FIQIYGLTET SPLLTINRSR VEWDDLPPED RAGKLVRAGA PALGVTLKLS DSGEVLARSN
VILAGYWERP QESAGALAGG WFHTGDGGVI DDEGYLTISD RKKDVIITGG ENVSSIQVED
CLFGHPAVAE VAVIGVPDEK WGEAIKALVV LAEGRTATEA ELIKHCKERL ASYKAPTSVE
FRDQLARTAT GKLQKFKLRA PYWEGHERQV D
|
|---|
| |