Gene Francci3_2139 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_2139 
Symbol 
ID3905529 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp2507308 
End bp2508519 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content70% 
IMG OID637879474 
Productdiguanylate phosphodiesterase 
Protein accessionYP_481240 
Protein GI86740840 
COG category[T] Signal transduction mechanisms 
COG ID[COG2200] FOG: EAL domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.067843 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGTCC GTCCAACCCC CGCCTCGGTG CTCGGGCCGA AGGCCGAGGT TCCCGAGCCG 
GCGACGGCGG TGGTGGAGCT GCTGGGGATA CTGCGCCGCC ATCTGGGCAT GGATCTTGCC
TGGCTCGGTC GCATCGAGGC GGACGTCCTC GTCGTGCAGG TCATCAACGG GGACGGCGCG
TCGTTCCAGC TGGCCCCGGG CTCCACCGTT CGGCGCGAGA GCGCCCTGTT CGGACGCGTC
CTGTCCGGTG AGTTTCCCAC CGTCATCCCG GACACCCGAG CCGATCCGCG CATCCTGCGA
CTGCCCGTCG TCGACGAACT CGACGTGGGG GCCTACGCCG CCGTGCCGGT GGTCGACAGC
GACGGCATCG TCTACGGCCT GGCCGGCTGT CTCGGGCACG GGCCGCATCC GCACCTGCGG
CCGCGCGACG GCCGGTTCCT GCGGATGATC GCGGAGATCC TCGGCGATTC CGTGACCGAC
CTGCACCGGA TGTGGGAGGT CCGCAGCCGC GTCTGGCGCG ACGTCAGCCA TGTGATCGAC
GGCGGGGGGC CCGCGCTCGC CTTCCAGCCG GTGCTCGACC TCGAACACGG AAAGATCATC
GGAGTGGAGG CGCTGTCCCG GTTCTCGGAC TACGCCCGCA GCCCGTCACA GTGGTTCACC
GCGGCAGGCT CCGTCGGCCT CAACGTCGAT CTCGAACTCG CCGCGGTCCG ACGCGCGCTC
GCCGTGCTGC CCCGGCTGCC GACGCACATG ATCCTCGCGA TTAACGTCTC GGCGACGACC
CTCTCGGCCG GCCTGGTGGA CATGATCATG AACGAGGATG CCGAACGCAT CCTCGTGGAG
ATCACCGAGC ACGAACGGAT CGGCGACACT CCGGCGATCA ACCGCGACAT CGAGCACCTG
CGCCGGCTCG GCGTCCGCAT CGCCGCCGAC GACGTGGGTA CCGGCTATGC CGGGCTGGAA
CAGCTCGTCC GGCTGCGACC GGAGATCATC AAGATGGACT GCTGCCTGAC CCAGGGCATC
GACACCGACC CGGCCCGGCG GGCCGTGGCC GCCGGGCTGG TGCACGTCGC CAAGGAGATC
GGAGGCAGCG TGGTCGCCGA GGGCATCGAG ACCGCGGCCG AACTCCAGGC CACCCGGGAG
ACCGCGATCC CCTACGGCCA GGGCTTCCTT CTCGGCCCGC CCACCCCCGT CCTGCCCGAG
GCCGTCAGGT AA
 
Protein sequence
MSVRPTPASV LGPKAEVPEP ATAVVELLGI LRRHLGMDLA WLGRIEADVL VVQVINGDGA 
SFQLAPGSTV RRESALFGRV LSGEFPTVIP DTRADPRILR LPVVDELDVG AYAAVPVVDS
DGIVYGLAGC LGHGPHPHLR PRDGRFLRMI AEILGDSVTD LHRMWEVRSR VWRDVSHVID
GGGPALAFQP VLDLEHGKII GVEALSRFSD YARSPSQWFT AAGSVGLNVD LELAAVRRAL
AVLPRLPTHM ILAINVSATT LSAGLVDMIM NEDAERILVE ITEHERIGDT PAINRDIEHL
RRLGVRIAAD DVGTGYAGLE QLVRLRPEII KMDCCLTQGI DTDPARRAVA AGLVHVAKEI
GGSVVAEGIE TAAELQATRE TAIPYGQGFL LGPPTPVLPE AVR