Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_2139 |
Symbol | |
ID | 3905529 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | - |
Start bp | 2507308 |
End bp | 2508519 |
Gene Length | 1212 bp |
Protein Length | 403 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637879474 |
Product | diguanylate phosphodiesterase |
Protein accession | YP_481240 |
Protein GI | 86740840 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.067843 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGGTCC GTCCAACCCC CGCCTCGGTG CTCGGGCCGA AGGCCGAGGT TCCCGAGCCG GCGACGGCGG TGGTGGAGCT GCTGGGGATA CTGCGCCGCC ATCTGGGCAT GGATCTTGCC TGGCTCGGTC GCATCGAGGC GGACGTCCTC GTCGTGCAGG TCATCAACGG GGACGGCGCG TCGTTCCAGC TGGCCCCGGG CTCCACCGTT CGGCGCGAGA GCGCCCTGTT CGGACGCGTC CTGTCCGGTG AGTTTCCCAC CGTCATCCCG GACACCCGAG CCGATCCGCG CATCCTGCGA CTGCCCGTCG TCGACGAACT CGACGTGGGG GCCTACGCCG CCGTGCCGGT GGTCGACAGC GACGGCATCG TCTACGGCCT GGCCGGCTGT CTCGGGCACG GGCCGCATCC GCACCTGCGG CCGCGCGACG GCCGGTTCCT GCGGATGATC GCGGAGATCC TCGGCGATTC CGTGACCGAC CTGCACCGGA TGTGGGAGGT CCGCAGCCGC GTCTGGCGCG ACGTCAGCCA TGTGATCGAC GGCGGGGGGC CCGCGCTCGC CTTCCAGCCG GTGCTCGACC TCGAACACGG AAAGATCATC GGAGTGGAGG CGCTGTCCCG GTTCTCGGAC TACGCCCGCA GCCCGTCACA GTGGTTCACC GCGGCAGGCT CCGTCGGCCT CAACGTCGAT CTCGAACTCG CCGCGGTCCG ACGCGCGCTC GCCGTGCTGC CCCGGCTGCC GACGCACATG ATCCTCGCGA TTAACGTCTC GGCGACGACC CTCTCGGCCG GCCTGGTGGA CATGATCATG AACGAGGATG CCGAACGCAT CCTCGTGGAG ATCACCGAGC ACGAACGGAT CGGCGACACT CCGGCGATCA ACCGCGACAT CGAGCACCTG CGCCGGCTCG GCGTCCGCAT CGCCGCCGAC GACGTGGGTA CCGGCTATGC CGGGCTGGAA CAGCTCGTCC GGCTGCGACC GGAGATCATC AAGATGGACT GCTGCCTGAC CCAGGGCATC GACACCGACC CGGCCCGGCG GGCCGTGGCC GCCGGGCTGG TGCACGTCGC CAAGGAGATC GGAGGCAGCG TGGTCGCCGA GGGCATCGAG ACCGCGGCCG AACTCCAGGC CACCCGGGAG ACCGCGATCC CCTACGGCCA GGGCTTCCTT CTCGGCCCGC CCACCCCCGT CCTGCCCGAG GCCGTCAGGT AA
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Protein sequence | MSVRPTPASV LGPKAEVPEP ATAVVELLGI LRRHLGMDLA WLGRIEADVL VVQVINGDGA SFQLAPGSTV RRESALFGRV LSGEFPTVIP DTRADPRILR LPVVDELDVG AYAAVPVVDS DGIVYGLAGC LGHGPHPHLR PRDGRFLRMI AEILGDSVTD LHRMWEVRSR VWRDVSHVID GGGPALAFQP VLDLEHGKII GVEALSRFSD YARSPSQWFT AAGSVGLNVD LELAAVRRAL AVLPRLPTHM ILAINVSATT LSAGLVDMIM NEDAERILVE ITEHERIGDT PAINRDIEHL RRLGVRIAAD DVGTGYAGLE QLVRLRPEII KMDCCLTQGI DTDPARRAVA AGLVHVAKEI GGSVVAEGIE TAAELQATRE TAIPYGQGFL LGPPTPVLPE AVR
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