| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2027 |
|---|
| Symbol | |
|---|
| ID | 3906743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 2381844 |
|---|
| End bp | 2385431 |
|---|
| Gene Length | 3588 bp |
|---|
| Protein Length | 1195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637879363 |
|---|
| Product | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
|---|
| Protein accession | YP_481130 |
|---|
| Protein GI | 86740730 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
[COG1013] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
[COG1014] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit |
|---|
| TIGRFAM ID | [TIGR02176] pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.689168 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTTCCG CCTTCGGGGA CGGGAAGGAA GTCCCTCCTC GATCCGCCTC CGGACGCCTG
AGTCTGGGAT GTATGGGTCA GAAGACGATC GATGGGAACG AGGCCGCCGC GTTGGTGGCC
TACCTGGCGA GCGAGGTGAT CGCGATCTAT CCGATCACCC CGGCGTCGGC TATGGGGGAG
CTGGCCGATG CGTGGGCGGC GAAGGGCCGC CCGAACCTGT GGGGTGCGGT GCCCGAGGTC
GTCCAGCTGC AGAGTGAGGG TGGTGCCGCC GGCACTGTGC ACGGGGCGTT GCAGGCGGGT
GCGCTGTCGA CGACGTTCAC CGCCTCGCAG GGTCTCCTGC TGATGCTGCC CAACATGTTC
AAGATCGCCG GCGAGCTCAC GCCGATGGTT CTTCACGTCG CGGCCCGGAC CGTGGCCACG
CACGCACTGT CGATCTTTGG TGATCACAGT GATGTGATGG CGGCGAGGTC GACCGGTTTC
GCCATGCTGT GTTCGGCGTC GCCGCAGGAG GCGCATGACC TGGCCGCGGT GGCGCATGCG
GCAACGCTCG AGTCGCGGGT ACCGTTCCTG CACTTCTTCG ACGGTTTCCG CACGTCGCAC
GAGCTGAACG AGGTGGCGTT GCTCGACGAC GGCACGCTGG GTGGTCTGCT GGCTGCCGGG
CATATCGATG CCCATCGCCG CCGGGCGTTG TCCCCCGACC GTCCGGTGAT CCGGGGCACC
ACCCAGGATC CCGACACGTT CTTCCAGGCC CGGGAGGCGT CGAACACGTT CTACGCCGCG
GTTCCCGGGA TTGTGCAGGG GGTGATGGAC CGGCTGGCCG CGGCGACGGG CCGGGCCTAC
CGTCTGTTTG AGTATCAGGG TCATCCCGAG GCCGAGCGGG TTGTGGTCGT CATGGGGTCG
GGTCGGTCGG CGGTGCGGGA GGCGGTCACC CGGCTGGTCG AGCGAGGCGA GCGGGTCGGG
TTCGTCCAGG TTCGTTTGTT CCGTCCCTTC GACGGCCGGG CGTTGCTCGC GTGCCTGCCC
TCGACGGTGC GGTCGGTCGC GGTCCTGGAC CGGACGAAGG AGCCGGGCGC GTCGGGTGAG
CCGTTGCGGC TGGATGTCGT CGCCGCGTTC GCGGAACGGC CCGAGCGGAT GCCGCGGGTG
ATCGGTGTCC GTTACGGGTT GGCGTCGAAG GAGTTCACCC CGGCGATGGC GGCGGCGGTG
TTCGACGAGC TGGCCGGCGC GGCGCCGCGC CGGGAGGTGA CGGTGGGTAT CCGCGACGAC
GTCACGGACC TGTCGCTCGA GGTGGACGAC GACCGTGTCC CGGAGCCGGA TGACGTGCTG
CGGGCGGTGT TCTACGGGCT CGGTAGCGAC GGCACGGTGG GTGCCACGCG GGCAACGGCC
GGTATCGTCG CAGCTCGCAC GCCGCTGCAC GCGCAGGCGT ACTTCGTGTT CGACTCCAAG
AAGTCGGGGT CGATGACGGT CTCGCATCTG CGGCTGTCGC CACGACCGGT CGACTCCCCG
TGGCTTATCC AGAACGCCCA GTACGTGGGC TGTCATCAGT CCTCGCTGCT GGAACGGGTG
GACGTGCTCG CCGTGGCCGC GCCGGGTGCC ACCGTGCTGC TCAACAGCCC GCATGCGCCG
GAGAAGGTGT GGGAGCATCT GCCGGCCGAC GCGCAGCGGC ACCTGCTCGA CCGGGATGCG
CGCCTGTTCG TCGTCGACGC CGACCGGGTG GCGAAGCAGG CCGGCATGCC CGGGATCGTA
AGCCCGGTGC TGCAGACCTG TTTCCTGGCG CTGTCCGGTC TGCTGGACCG CGACGAGGCG
ATCGCGGCGG TCAAGGACGG GGTCCGCGCC GCCCGCGGCA AACGCGGTGA CGCCGTGCTG
CAGCGTAACT TCGCCGCCAT CGATGCCGCG CTCGACGCCC TGCACGAGGT CGACCTGCAG
GCTCGTGTGG TCACGGGCCA GGCGCGCCGG CAGCTGCTCG GCGAGGCGCC CGCATTCGTC
CGGCAGGTGA CGGCGCGGAT CATGGCAGGG GAGGGGAACC TGCTTCCCGT CAGCGCACTA
CCGGCTGACG GCACCTTCCC CGTCGGGACG GCCCGGTACG AGAAACGCGG CCTGACCCGC
GAGCTTCCGG TGTGGGATGC GGACCTGTGC ATCGACTGCG GCAAGTGCGC GATTTCCTGC
CCGCACGCCG CCATCCGGAT GACGTTGTTC GACCCGGCGC GGCTCGCCGA CGCGCCGGCG
TCGTTCCGGC ACAAAAAGCC GAAGGACCGC ACCCTCGCGG CGTTCCGGCT CGCGGTGCAG
GTGGCACCGG ACGACTGCAC CGGCTGCGGC ATCTGCGTCG AGGCCTGCCC GGCGAAGAGC
CGGGAGATCG AGGGCCATCG CGCCCTGGAC ATGGTCGACG CCGCACCCCG CTTCGAGGAG
GAACGTGCCG GATGGGCGTT CCGCGAAACG CTGCCGGCGG TCCCACCGGC GCTCGCCCCA
CCGGACACGG TCCGCGGCTC GCAGCTACGG GAGCCGCTGT TCGAGTTCTC CGGCGCCTGC
GCCGGCTGCG GGGAGTCGCC CTACCTCAAA CTGCTCACGC AGCTGTTCGG TGACCGCATC
ATCGTCGCCA ACGCCACGGG ATGCTCGTCC ATCTACGGCG GCAACCTGCC GACCACACCC
TGGTCGGCGG GCACCGACGG CCGCGGCCCG GCCTGGGCGA ACTCGCTGTT CGAGGACAAC
GCCGAGTTCG GGCTCGGGAT ACGCCTCGCG CTCGACAGCC GGGCCCGCGA GGCCCGCCGA
CTGCTGCGCG CACAGACCGC GACGGTCGGC GGCACGCTCG TCGAGGCGCT GCTCACCGCC
GACCAGTCGA CCGAGGCCGG CATCCTCGAC CAACGCCAGC GGGTGGCCGA ACTACGCCGG
CGGCTGGCCA CCGTCGACCA CGACACCACC CTCGACGCTG TCCTCGACGA CCTCGTCGAC
AAAAGCGTGT GGATCATCGG TGGGGACGGG TGGGCGTACG ACATCGGCTT CGGCGGCCTC
GACCACGTGC TCGCGTCGGG ACGCGATGTC AACGTGCTCG TCCTCGATAC CGAGGTGTAC
TCCAACACCG GTGGGCAGGC GTCGAAGTCG ACGCCGCGCG CCGCGGTCGC GAAGTTCGCC
GGCGGCGGCA AACGGACCCG CAAGAAAGAC CTCGGGCTGC TCGCCGCCGC CTACGGCGAC
GTGTACGTCG CGCAGGTCGC CCTCGGCGCC AACGACCAGC ACACGGTGAA AGCCTTCAAC
GAGGCGGCCA GCTGGCACGG CCCGTCCCTC ATTGTCGCCT ACAGCCACTG CATCGCCCAC
GGCATCACCA TGACCGACGG CCTGGCCCAC CAGAAAGCCG CGGTGAAATC GGGATACTGG
CCGCTCTACC GGGTCGACCC CCGCGCGGAA AGGCCGTTCT CCCTCGACTC GCGGGCACCG
TCCATCCCCT TCAGCGAGTT CGCCGCCACC GAATCCCGGT TCACCCTCCT CAACACCGTC
AACCCCGACG AAGCCGACGA GCTCGCGGCA CTCGCCCAAC GCGACATCCT CGGGCGCTGG
CAGACCTACG AACACGAAGC CGCCCACCCC CGCCACACCA CCACGTAA
|
|---|
| Protein sequence | MTSAFGDGKE VPPRSASGRL SLGCMGQKTI DGNEAAALVA YLASEVIAIY PITPASAMGE
LADAWAAKGR PNLWGAVPEV VQLQSEGGAA GTVHGALQAG ALSTTFTASQ GLLLMLPNMF
KIAGELTPMV LHVAARTVAT HALSIFGDHS DVMAARSTGF AMLCSASPQE AHDLAAVAHA
ATLESRVPFL HFFDGFRTSH ELNEVALLDD GTLGGLLAAG HIDAHRRRAL SPDRPVIRGT
TQDPDTFFQA REASNTFYAA VPGIVQGVMD RLAAATGRAY RLFEYQGHPE AERVVVVMGS
GRSAVREAVT RLVERGERVG FVQVRLFRPF DGRALLACLP STVRSVAVLD RTKEPGASGE
PLRLDVVAAF AERPERMPRV IGVRYGLASK EFTPAMAAAV FDELAGAAPR REVTVGIRDD
VTDLSLEVDD DRVPEPDDVL RAVFYGLGSD GTVGATRATA GIVAARTPLH AQAYFVFDSK
KSGSMTVSHL RLSPRPVDSP WLIQNAQYVG CHQSSLLERV DVLAVAAPGA TVLLNSPHAP
EKVWEHLPAD AQRHLLDRDA RLFVVDADRV AKQAGMPGIV SPVLQTCFLA LSGLLDRDEA
IAAVKDGVRA ARGKRGDAVL QRNFAAIDAA LDALHEVDLQ ARVVTGQARR QLLGEAPAFV
RQVTARIMAG EGNLLPVSAL PADGTFPVGT ARYEKRGLTR ELPVWDADLC IDCGKCAISC
PHAAIRMTLF DPARLADAPA SFRHKKPKDR TLAAFRLAVQ VAPDDCTGCG ICVEACPAKS
REIEGHRALD MVDAAPRFEE ERAGWAFRET LPAVPPALAP PDTVRGSQLR EPLFEFSGAC
AGCGESPYLK LLTQLFGDRI IVANATGCSS IYGGNLPTTP WSAGTDGRGP AWANSLFEDN
AEFGLGIRLA LDSRAREARR LLRAQTATVG GTLVEALLTA DQSTEAGILD QRQRVAELRR
RLATVDHDTT LDAVLDDLVD KSVWIIGGDG WAYDIGFGGL DHVLASGRDV NVLVLDTEVY
SNTGGQASKS TPRAAVAKFA GGGKRTRKKD LGLLAAAYGD VYVAQVALGA NDQHTVKAFN
EAASWHGPSL IVAYSHCIAH GITMTDGLAH QKAAVKSGYW PLYRVDPRAE RPFSLDSRAP
SIPFSEFAAT ESRFTLLNTV NPDEADELAA LAQRDILGRW QTYEHEAAHP RHTTT
|
|---|
| |