Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_1989 |
Symbol | |
ID | 3903697 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | - |
Start bp | 2336039 |
End bp | 2338207 |
Gene Length | 2169 bp |
Protein Length | 722 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637879325 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_481092 |
Protein GI | 86740692 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.965966 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGTCTG AGCCGAGGAG AACCTTGTCG GACGTTTCGT CGGACTACGC ACTGGATGCC GGTTTCGATT CGCTACTGGG CACGCAACTG ATCGATTTCA GTCCGACGGC GATGGTAATT ATCGATCCGG ATCTGCGGGT GCGACGGAGC AACCGGTCCT TTCGGGAAAT ATACGGCCTG TCTCCCGAGC AACTGGCGGG AACATCCATC CCCGAGCTGC TGCCGGATAT GGACCCGCGG GTGTGGAAGC TTGCCCGGTG GGTCCTGGCC AGCGGTGAAT CAGTTGAAGA CACGGAGATC ATCGGCAGGA GCGTGGCTTT CCCGCAGGAG GAACGCACCT GGCGCTTTTC GCACTTTCCG CTCCGGGACC GTGAGGGGGT GCCCGCGGCG GTTGGCGTGA CGCTGGTCGA TGTGACGGAT CAGCGCCGTG CCGAGCGGAA GCATGCGGAA GCAGAGCGGC GACTGCGGCT GCTCACCCGG GCGAGCACAC TCGTCGGGCG ATCCCTGGAA CTGGACGCCA CACTGGCGAG TATAGCCGAT TTTATGGTAC CGGAATTCGC CGACACCTGC AGCGTGTACC TGCTCGACGA ACCCCTTGAC ACAGACGCCC GACCGGAGCT GTTGGAATTG CGGCGCGCCA TAAAAACACG CGTTTCCGGT CCGCCCCTGC AAAGTTGCGA CATCCCGTTC TCAGCCGCCG GAGAGATCCT TTACTGCCAC CGAAACTCTC CGATCTACCA AGCCTTTGCG TCGGGTCGCC CGTTTCACCA CGCGGCCGAC GATGAATCGT TGATCAGCGG ATATCAGACT CCTGGATTCC TCGACTACTT CCGGCGGCTG CTGCTGCGTT GGGGGATCGC GGTGCCCCTG CTGGTGGGGC GCTACTTTCA TGGGGTCATG GTTGTACATG TCGGCGTTTC CGGGCGTACC TACACCGACG ACGACGTCGA GATGGCCGCC AACCTTGGTG GACGTATCTC AGCCGCCATC GCCAATGCCC GCGCGTACGC TCGCGAGCGG GAGGTTTCTG TCACGCTGCA GCGCAGCCTG CTTGCACCCG ACATCCCGGC CGTGGCCGGA ATGGACATCG CCTGGCGGTA CGAGCCGGGC TCCCTTCCCG GCCGGTCGCC CTGCGCCGAG CCGGGTCCGC CGATCGACGC CGAGGTGGGC GGGGACTGGT TCGACCTCAT CCCGCTCTCG GCGGGTCGGG TAGCTCTCGT CATCGGAGAC GTGGCCGGCC GCGGTGTGAC CGCCGCCGCC GTCATGGGTC AACTCCGCAC CGCCAGCCGG GCGTTCGCCT CACTCGATCT GCCCGCCGAC GACGTACTCA CCCACCTGGA CAACCTTGCC CAGACCATCG GGGCAGGGCC TGACGGTGCC TTGGCGAGCT GCGTCTACGC GATCTTTGAG CCCACCACCG CGACGATAGT CCTCGCCAAC GCCGGCCACC CCCCTCCCGC CCTGCGTGAT CCCGATGGCC GGGTCCGCCT CCTGACCGGC GGGGGCGGCG CGTTTCTCGG TATCGGCGGG CAAGTTTTCG TCCAGACCTG CTACCCGTTC CCCGTCGGGG CGACGCTCGC GCTCTACACC GACGGCCTCG TCGAGTCACG CGATATCGAT ATCTTCCAGG GAATCGGCCG GCTACAGCAC GCTCTCGCGG ACGCCGGCAC CGCGGACGCC ACCGCCGACC GGCTGATGCG CCTGGTCGAT CAGGCCAATC GAGACGACGA CGTGGCGCTC CTGCTCGTCC GGGCCGCCGC GGCCATCAAC ACTCGCACCC TTACCATCCC TCTCACCCTC GACCTCAGGG CCGTCGGACA GGCTCGCCAC GCCGTCAACG CCGCGCTGCG TCGCTGGCAG CAGCCCGAAA CCATCGAGAC CGCGGAACTA CTGGTGAGCG AGATCGTCAC CAATGCGATC CGCTATTCCC GAGTCCCCGG CGAACTCGTG CTCCGCAGCG TCCCGACGGC CCTCTACATC GAGGTCTCCG ACAGCGACAG TCACCTCCCC CGTGTCCTCC ACCCCAACGA GCAGGAAGAA CACGGTCGTG GCCTGATCCT CGTCGATGCA CTCGCTGCCC GGTGGGGCAC CCGCCCTACC CACTCCGGCA AGACGGTCTG GTGCCAACTC GACACCGGCA CTGACACCGG CCCGGAAATC TTCACCTAG
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Protein sequence | MTSEPRRTLS DVSSDYALDA GFDSLLGTQL IDFSPTAMVI IDPDLRVRRS NRSFREIYGL SPEQLAGTSI PELLPDMDPR VWKLARWVLA SGESVEDTEI IGRSVAFPQE ERTWRFSHFP LRDREGVPAA VGVTLVDVTD QRRAERKHAE AERRLRLLTR ASTLVGRSLE LDATLASIAD FMVPEFADTC SVYLLDEPLD TDARPELLEL RRAIKTRVSG PPLQSCDIPF SAAGEILYCH RNSPIYQAFA SGRPFHHAAD DESLISGYQT PGFLDYFRRL LLRWGIAVPL LVGRYFHGVM VVHVGVSGRT YTDDDVEMAA NLGGRISAAI ANARAYARER EVSVTLQRSL LAPDIPAVAG MDIAWRYEPG SLPGRSPCAE PGPPIDAEVG GDWFDLIPLS AGRVALVIGD VAGRGVTAAA VMGQLRTASR AFASLDLPAD DVLTHLDNLA QTIGAGPDGA LASCVYAIFE PTTATIVLAN AGHPPPALRD PDGRVRLLTG GGGAFLGIGG QVFVQTCYPF PVGATLALYT DGLVESRDID IFQGIGRLQH ALADAGTADA TADRLMRLVD QANRDDDVAL LLVRAAAAIN TRTLTIPLTL DLRAVGQARH AVNAALRRWQ QPETIETAEL LVSEIVTNAI RYSRVPGELV LRSVPTALYI EVSDSDSHLP RVLHPNEQEE HGRGLILVDA LAARWGTRPT HSGKTVWCQL DTGTDTGPEI FT
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