| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1929 |
|---|
| Symbol | |
|---|
| ID | 3904291 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 2266390 |
|---|
| End bp | 2268336 |
|---|
| Gene Length | 1947 bp |
|---|
| Protein Length | 648 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 637879266 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_481033 |
|---|
| Protein GI | 86740633 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.362101 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCCA TCCGGAGCGA GGTCACCTCG CCCACCTCCG CCATCTCGCC CATGTCTCCG
ACTCTCCATC CGCGGCCGGG CCCCCCACGG TCGGCGACGA CCGGCGGGCC GACCCACGCG
ACCCACGGCA GCCACCCGAC CGACCCGACC GGCACGACCG ACGCTCGCGG GCACCATGAG
CCGCTCGACG CCGAGACGTT GCACGACGCA CTGGACGTCG CGGCCGCCCG GCATCCCGAC
ACGCCCGTCA CGTTCCCGTC CACCCACGAG GTGATCTCGC TGCGGGACCT CGCGGCCACC
TCCCGGATCA TCGCGGCCGC GCTGACGACG GACGGGGTCC AGGCCGGCGA GCGGGTTGGG
GTGCTGGCCG CGAACTCGGC CGAGTTTCTG CTCGCGCTCT TCGCGATCAG TCGGGCGGGC
GCGGCGGCCT GTCCGCTGCC ACTGCCGACC ACCGCGCACG ACCTCAACGG CTATGCCGAC
CGGGTCTCGC GCACTACGGC GGCCGCGGGC ATCCACCGGG TGGTCACCGG CGGCCGAGTG
TCGGCCATCC TGCGCCGCAC GGCCGACCGG CTCGGCGGAC TCCGGTTCCT CCCCGCGGCT
GACCTGGTCC GCGACGTCGG TCCCGCCACG CCCACACGCC AGCCACATCC GGGTCCCGAA
TGCCCGGTGG GTGCGGTGGG TGCGGTGGGT GCGGACGACG TCGCGATCGT GCAGTTCACC
TCCGGCAGCA CCGCGGCCCC GAAGGGCGTG GTGCTCAGCC ACCGCGCCGT GCTGTGCGGC
ATCCGCGCGA TCATCGACGG CATCCGGCTC GGTGAAGGCG ATCACGGCGG AATCTGGTTG
CCGCTGTTCC ACGACATGGG GCTGTTCGCG ACCCTCAGCG CGATCATGAC CGGCATCCCG
ATGACCGTCT GGTCCCCGGC GGACTTCGTC CGTGACCCCG CCGGCTGGCT GCGCTCGTTC
CTCGCCAGCG GCGCCACGAT CTCGCCGGCG CCGAACTTCG CCTACGACGA CCTCGTCCGG
GCGATCGACC CAGACGAGGT ACCCGGGCTG GACATGCGCC GGTGGCGCGT CGCGCTGAAC
GGAGCCGAGC CGGTCTCCGC GGTCGGCGTC GAGCGCTTCC TCGACCACTT CGCGCCGGCC
GGGTTCGCCC CCACGGCGAT GTTCCCCGTG TACGGGATGG CCGAGGCCAC CCTGGCCGTG
GCCTTCCCGC CGCTGGGCCG CGCCCCCGTG GTCACCTGGG TCGACCGGGA CCGACTCGCC
GCCGAGGGAA TCGTGACGGA GGTCCCGCGC GAGCATCCGC GCGCCAAGGG GCTGGTCGCC
GTCGGCCGGC CGGTCCGCGA CATCCGGATT CGCATCGCCG ACCTGCACGG TGACGTCCTG
GCCGATCCGC TCGGCGACGG TCTGGCGCCG AGCCTGCGGG TGGGCGAGAT CCAGATCCGG
GGTGGTTCGG TCACCTCGGG CTACCTCACC GCGGGGGGCC TGACGACCGG GGGCTTCACA
GCGGACGGCT GGCTGCGCAC CGGCGACCTC GGCTTCCAGC GCGGCGACGA TCTGTTCGTG
ACCGGCCGGG ACAAGGAAAT GATCATTATA CGCGGCGTGA ACTACTACCC CGAGGACGCC
GAAGCGGCGG TGCGTGACCT TCCGGGCGTG CACCGACGTC GCGTCGTCGC CTTCGGCTCC
CCCGACCAGC CGGACGCCGC CGGCAGCCCT CCGGACGCCA CCGGAGCGAA GGCTGCCGGC
GGCGTCACGG TGGTCGGCGA GACCGCGCTG ACCGAGCCCG CGGACCGAGC CCGACTCGCG
ACCGACCTGC GGATGGCGGC GACTGCGGCG CTGGGGCTGT CCACGGTGAC GGTGCGTCTG
GTCGAGCCCG GCGCGCTGCC CCGCACCTCC AGCGGCAAAT TCCAACGGCT GGCGGTACGC
GACCTGGTCG GGCGCGGCGT GCTCTGA
|
|---|
| Protein sequence | MPAIRSEVTS PTSAISPMSP TLHPRPGPPR SATTGGPTHA THGSHPTDPT GTTDARGHHE
PLDAETLHDA LDVAAARHPD TPVTFPSTHE VISLRDLAAT SRIIAAALTT DGVQAGERVG
VLAANSAEFL LALFAISRAG AAACPLPLPT TAHDLNGYAD RVSRTTAAAG IHRVVTGGRV
SAILRRTADR LGGLRFLPAA DLVRDVGPAT PTRQPHPGPE CPVGAVGAVG ADDVAIVQFT
SGSTAAPKGV VLSHRAVLCG IRAIIDGIRL GEGDHGGIWL PLFHDMGLFA TLSAIMTGIP
MTVWSPADFV RDPAGWLRSF LASGATISPA PNFAYDDLVR AIDPDEVPGL DMRRWRVALN
GAEPVSAVGV ERFLDHFAPA GFAPTAMFPV YGMAEATLAV AFPPLGRAPV VTWVDRDRLA
AEGIVTEVPR EHPRAKGLVA VGRPVRDIRI RIADLHGDVL ADPLGDGLAP SLRVGEIQIR
GGSVTSGYLT AGGLTTGGFT ADGWLRTGDL GFQRGDDLFV TGRDKEMIII RGVNYYPEDA
EAAVRDLPGV HRRRVVAFGS PDQPDAAGSP PDATGAKAAG GVTVVGETAL TEPADRARLA
TDLRMAATAA LGLSTVTVRL VEPGALPRTS SGKFQRLAVR DLVGRGVL
|
|---|
| |