| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1905 |
|---|
| Symbol | |
|---|
| ID | 3906854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 2237735 |
|---|
| End bp | 2238547 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637879243 |
|---|
| Product | lipolytic enzyme, G-D-S-L |
|---|
| Protein accession | YP_481010 |
|---|
| Protein GI | 86740610 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2755] Lysophospholipase L1 and related esterases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00675962 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.682362 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTCCG GCACCGGATC CCGGCGGTTC GTCGCGCTGG GCGACAGCAT CACGGTCGGC
CTCGGCGACG GCGTGACGAT GGGACGCGAA CACCGCCGCC CCGCGACGGG AGGACGGGGC
TTCGCCGCCC GGCTCGCCGC GTGCCTGGGC CCGGCCGGCG CCATGGAATT CACCAATCTG
GCCACCACGG GAGCGACCAC GCACGACGTG CGTACCCGTC AGCTCCCCGT CGCCCTGTCG
CTGGGCCCCC AGATCGCCAG CGTGATCGCC GGCATGAACG ACGTGCTGAA ACCGACGTTC
GATCCGCTGC GGTTACGCCA GGACCTGGTC TGGACGGTGG GCCGACTGCG GGCCGACGGA
GTCGTCGTCC TCACCGCTAC CATGCCCGAT CCCAGCCGGC TGCTCCCGGT GCCGGCGCCG
TTCGGCCGGA TCCTGAGCGA ACGGGTCGAA CGGCTCAACG CGGCGGTCCA GGCCGCGGCC
CGGACGGACC CCGGAGTGTT GATGGTCGAC CTCGGCGGGC ACCCTGCGGT GCGCAGCCGG
TCCAGCTTCG ACGTGGACCG GATCCACCCG GGGCCACGCG GCCACCGCCT GATCGCGCAG
GCGTTCGCCC ACCGTCTGTC GCACGCCGGG GTACCACTCG TGGGTCTGCC GGACGGACCC
GATCATGAGG AACCGGCTCC GGGAATCATC GAGCACTCCT ACTGGCTGCT GAGCGTGGGC
CTGCCCTGGC TGGCCGGGCG GTGCCTGCCC AGAGGCGACA AATGGCGCTA TCACCCGGAA
AAAGGTCTGG TACGGCCCCC TCGGCGAGCC TGA
|
|---|
| Protein sequence | MDSGTGSRRF VALGDSITVG LGDGVTMGRE HRRPATGGRG FAARLAACLG PAGAMEFTNL
ATTGATTHDV RTRQLPVALS LGPQIASVIA GMNDVLKPTF DPLRLRQDLV WTVGRLRADG
VVVLTATMPD PSRLLPVPAP FGRILSERVE RLNAAVQAAA RTDPGVLMVD LGGHPAVRSR
SSFDVDRIHP GPRGHRLIAQ AFAHRLSHAG VPLVGLPDGP DHEEPAPGII EHSYWLLSVG
LPWLAGRCLP RGDKWRYHPE KGLVRPPRRA
|
|---|
| |