| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1872 |
|---|
| Symbol | |
|---|
| ID | 3906147 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 2207079 |
|---|
| End bp | 2208209 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637879210 |
|---|
| Product | IS630 family transposase |
|---|
| Protein accession | YP_480977 |
|---|
| Protein GI | 86740577 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3415] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.226445 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTGGACG CGGCCCGCGG CTACTCCAAC GCGCGGATAG CCCGGCGACT GTGCGTGACC
GAGGACACGG TCCGCACGTG GCGGGGCCGG TTCGCGCGGC GACGCGAGGC GGGACTGGTC
GACCTGCCCC GGTCGGGTCG GCCACGGCGG ATCAGCGAGG CGGAACGGGC CGAGGTCGTC
GCGCTGGCCT GCCAGTTACC TGCCGAGACC CAGGTGCCGC TGGCCCGCTG GTCGTGTCCG
GAACTCGCCG CCGAACTGCT CTCCCGCGGC CTGGTCGACG CGATCTCGGC GTCGTCGGTG
CGGCGGATCC TCGCCGAGCA CCCGATCAAA CCGTGGCGCT ACCAGTCCTG GATCTTCGCG
CGCGGCCCGG GCTTCGCCGC GAAGGCGAAA GTGATCCTCG ATCTCTACGA GGGCTTCTAC
CAGGAGGAAC CCCTCGGCCC CGAGGATCGA ATCGTCTCGA TCGACGCGAA GCCGTCGATC
CAGGCGAGAG CCCGGATCCA CCCGACCACC CCGCCCGCCC CGGGCAGGAT CATCCGGGTC
GAGCACGAGT ACGAACGTCA CGGCGCGCTC GCGCTGTTGC CCGCGCTCGA CGTCCAGACC
GGGAGGATCG CCGCCGTGCT GACCCCGCCG ACGACGGGCA TCGCGCCGTT CATGGAACTG
ATGGGCCAGG TCATGGCCCA GGACCGCTAC CGGACGGCGA AGCGCGTGTT CGTGATCGTC
GACAACGGCT CCGACCACCG AGGCCAGGCC TCGATCAACC GACTCAGGGC CGCCCACCCG
AACCGCATCC TGATCCACAC CCCGACACAC GCCTCATGGC TGAACCAAGT GGAGATCTTC
TTCTCGCTCG TCCAACGGAA GGTCGTGTCA CCCTGCGACT TCGCCAGCCT CGACGTGCTC
GCCGACACCC TGACAGCGTT CGTCGACCGC TACAACGTCA CCGCCACACC GTTCAAGTGG
AAGTACACCG CGGCCGACCT CGAACGCCAC CTCGCCCGCC TCGACGACGA CACAGCACCA
GCCGTCGCGG GCTCCGTCGC TCGGTTGCCC GTCCCACCAC CCGACACCAA TGATCACGGG
AGTCGGGTGG AGTCCGAACC AAGTGCCAGA GCCCTCGCGC AGGCCGCCTA A
|
|---|
| Protein sequence | MLDAARGYSN ARIARRLCVT EDTVRTWRGR FARRREAGLV DLPRSGRPRR ISEAERAEVV
ALACQLPAET QVPLARWSCP ELAAELLSRG LVDAISASSV RRILAEHPIK PWRYQSWIFA
RGPGFAAKAK VILDLYEGFY QEEPLGPEDR IVSIDAKPSI QARARIHPTT PPAPGRIIRV
EHEYERHGAL ALLPALDVQT GRIAAVLTPP TTGIAPFMEL MGQVMAQDRY RTAKRVFVIV
DNGSDHRGQA SINRLRAAHP NRILIHTPTH ASWLNQVEIF FSLVQRKVVS PCDFASLDVL
ADTLTAFVDR YNVTATPFKW KYTAADLERH LARLDDDTAP AVAGSVARLP VPPPDTNDHG
SRVESEPSAR ALAQAA
|
|---|
| |