| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1694 |
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| Symbol | |
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| ID | 3903271 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 2032640 |
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| End bp | 2035138 |
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| Gene Length | 2499 bp |
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| Protein Length | 832 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 637879032 |
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| Product | Type IV secretory pathway VirD4 components-like |
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| Protein accession | YP_480799 |
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| Protein GI | 86740399 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000925009 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0597569 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCTGC TCGCCGCGGC GACCACCACG CCGTCGTCGC CGCTCACGAT CTATCTGACG
GACCCGTGGG GCTTCCTCCA CCAGATCTTC GGCCAGCTAC GGGGATGGGT GGCGGTGTGG
GGCCCCATCG CCGGCCCGCT GCTCACCCTC ACCGCCGCCG GCCTGGTTAC CTTGCGCCGG
CGGCTGCGCC GCCGGTACCA GCAGCAGCTC GCCGCAGGCG CCCGCCTCGT GACCGTGCTG
GCCCCGCCCA CCGTCGACCC GGCGGGCGCG GGCGCGCTGT GGGCGAACCT GCTCGGCCTG
CTCCGGCCCG GCTGGCGGCG CCTGATCGGC CAGCCGCACC TCGTGTGGGA GTACCAGTTC
ACCGCCGACG GGGTGCGCAT CCAGATGTGG GTGCCCGGCG TCGTGCCCGA CGGCTTCGTC
GAACGCGCGG TCGAGGCGGC CTGGCCCGGA GCGCATACCC ACACCACGCC CGCCCGCGCA
CCATTGCCCG TCGTGGCCCG GCCAGGCCGG CGGCTACTCG CCGCCGGCGG CGAACTGCGC
CTCGCCCGCC CCGAAGCACT CCCGATCCGG GTCGACCACG ACGCCGACCC GATCCGCGCC
CTGCTCGGCG CGCCCGGCAG CCTCGCCCGC AACCAACGGG CGGCGGTCCA GATCCTGGCC
CGGCCGGTCA CCGGCCGCCG CGTCGCCCGG TCCCGCCGGG CCGCCCGCCG GCTGCGCGCC
GGCGGCTCCG CGCACCTGAT CGGCGGGCTG CTGGACCTGC TCACCCCCCG CACTGGCCGC
ACCCGGCAGC GCCGCCGGAC GGCTACCACC CCGGTGAAGG TCGACCCGCA GACGTCGCTG
GCCCTGTCCG CGGAAGACCG CGCCATCGTC ACGAAACAGC GCGGGGCCCA GTACGAGGTC
CGTGTCCGCT ACGCCATCGC CGCGATCCTC GACGATCACA CCGACGACAC CACCGCCGCC
CAGGTCGCTA GCCAGCTGCG CGGACGGGCG CACGCGATCG CGAGCGCCTA CGCGGCCTAC
GGCGACCACA ACTACTACCG CCGCGTGCGG CTGCGCCGTC CCCTGCCCGT CCTCGCTACC
CGGCAGTTCG GCCGTGGCGA CCTGCTCTCG GTCGCCGAGC TCGGCGCGCT GGCGCACCTG
CCGGTCGACG AGGCGACCCC GGGCCTGCAA CGCGCCGGAG CGAAGGCGGT CGCCCCGCCG
CCTGGCGTCG CCGGGCCCGG CCCGAATGTG CGCCCGCTCG GGCGGACCGA TGCCGGGCGT
GCGCGTCCGG TCGGTCTGCG GGTCCCGGAC GCCCGGCATC ACCTGCACGT CCTCGGCGCG
ACCGGCGCCG GCAAGTCCGA ACTGCTCGCC CGCATGACGC TCGACGACGT CGCCGCCCGT
CGAGGGGTGG TCAACGTCGA CCCGAAGGGC GACCAGATCA TCGACATCCT CGCCCGCTAC
CCGACCGACG CCCTCGACCG CCTCGTCCTG TTCGACGCCG AATCGAACAG CCGGCCACCC
TGCCTCAACC CGCTCGACCA GCCCGACCGG GGCCGGGCCG TCGACAACCT CGTCTCGATC
TTCTCCCGGG TCTACGCCGA CAGTTGGGGG CCGCGCACCG AGGACATCTT CCGCGCCGGC
CTGCTCACCC TCGCCGCACA ACCCGGCGTC CCGGTGCTCA CGGATCTACC GAAACTCCTC
ACCGACACCG CCTACCGGCA CCGGGCATTG GGCGAGATCA ACGACGACAT CCTCGCCGGC
TTCTGGACCT GGTACGAATC CATCTCCGAC GCCGCACGCG GCCACGCCGT CGCCCCACTG
ATGAACAAAC TGCGCGGCTT TCTGCTGCGG CCGTTCGTGC GGGCCGCGAT CGCCGCCGGA
CCCTCGACCG TCGACATGGA CACCGTGCTG AACGACGGCG GGGTGTGCCT GGTCCGCATC
GCCCAGGACG CCCTCGGCGT CGAAACCGCT GCCCTGATGG GCTCGATCGT CGTCTCCGCC
GTCTGGCAGG CCACCACCCG CCGCGCCCGC CTCCCCCAAG GGAAAAGGCC CGACGCCAGC
CTGTACTTGG ACGAGGCGCA CCATTTCCTC ACGCTTCCGT ACGCGTTGGA GGACATGCTC
GCCGCCGCCC GCGGCTACCG GCTGTCCCTC ACGTTGGCGC ACCAGAACCT CACCCAGCTG
CCTCGGCACC TGGAAGAAAG CATCGGCGCC AACGCCCGCT CCAAGATCTA TTTTACGGTC
AGCCCGGCGG ACGCGAAGCG GCTCGCCCGG CACACCGAGC CCCGGCTCGC CGAACACGAC
CTCGCCAACC TCGGCGTGTT CCATGCCGCC GCCCGCCTGG TCGTCGGCGG CGAAGAAGCC
CCCGCCTTCA CGGTCGTGAC CGAAAAGCTG CCGCCGCCGG TTCCCGGCCG CGCCGCCCAG
ATCCGCCGAG ACCTGCGCCG CCGCGCCGCC ACCCCCGCCG CACCTTCCCC TGCCGGTCCG
GGTCCGCGCC CGACCGCCGA CCCGCGCCGC GTCGCCTGA
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| Protein sequence | MDLLAAATTT PSSPLTIYLT DPWGFLHQIF GQLRGWVAVW GPIAGPLLTL TAAGLVTLRR
RLRRRYQQQL AAGARLVTVL APPTVDPAGA GALWANLLGL LRPGWRRLIG QPHLVWEYQF
TADGVRIQMW VPGVVPDGFV ERAVEAAWPG AHTHTTPARA PLPVVARPGR RLLAAGGELR
LARPEALPIR VDHDADPIRA LLGAPGSLAR NQRAAVQILA RPVTGRRVAR SRRAARRLRA
GGSAHLIGGL LDLLTPRTGR TRQRRRTATT PVKVDPQTSL ALSAEDRAIV TKQRGAQYEV
RVRYAIAAIL DDHTDDTTAA QVASQLRGRA HAIASAYAAY GDHNYYRRVR LRRPLPVLAT
RQFGRGDLLS VAELGALAHL PVDEATPGLQ RAGAKAVAPP PGVAGPGPNV RPLGRTDAGR
ARPVGLRVPD ARHHLHVLGA TGAGKSELLA RMTLDDVAAR RGVVNVDPKG DQIIDILARY
PTDALDRLVL FDAESNSRPP CLNPLDQPDR GRAVDNLVSI FSRVYADSWG PRTEDIFRAG
LLTLAAQPGV PVLTDLPKLL TDTAYRHRAL GEINDDILAG FWTWYESISD AARGHAVAPL
MNKLRGFLLR PFVRAAIAAG PSTVDMDTVL NDGGVCLVRI AQDALGVETA ALMGSIVVSA
VWQATTRRAR LPQGKRPDAS LYLDEAHHFL TLPYALEDML AAARGYRLSL TLAHQNLTQL
PRHLEESIGA NARSKIYFTV SPADAKRLAR HTEPRLAEHD LANLGVFHAA ARLVVGGEEA
PAFTVVTEKL PPPVPGRAAQ IRRDLRRRAA TPAAPSPAGP GPRPTADPRR VA
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