| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1693 |
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| Symbol | |
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| ID | 3903270 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 2030717 |
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| End bp | 2032606 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637879031 |
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| Product | Type IV secretory pathway VirB4 components-like |
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| Protein accession | YP_480798 |
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| Protein GI | 86740398 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000521447 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.17897 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGAC GAGCCCGACG CCGGACCTCC GCGCAGGCCC CCAGCCCGTC GACCCGGACA
GTGGACGCTG CCGCGGCGGC GTTCGTCCCG GACGCACTCA CGATCGCGCC CCGCCACCTG
GACGTCGGCG GGGATTACGT GGCCACGATG GCGATCACCG GCTATCCGCG TGAGGTCCAT
GCCGGCTGGC TCGCCCCGCT GGTGACCTAC CCGGGCCGGG TCGACGTCGC CGTGCACGTC
GAGCCGATTG ACCCGGTCAC CGCGGCGAAC CGGCTGCGCC GGCAGCTGTC GAAGCTGGAG
TCCGGCCGGC AGCTCGGCGA CGAGAAGGGC CGGCTGGTCG ACCCGCAGGT CGAGGCGGCG
ACCGAGGACG CCTACGACCT GTCCGCCCGC GTAGCCCGCG GCGAAGGCAA GCTGTTCAGG
CTGGGTCTGT ATTTCACCGT CCATGCGGCC AGCGAAGCCG AGTTGGCCGA CGAGGTCGCC
GCCGTGCGGG CGCTGGCGGC CAGCCTGCTG CTGGACGCCA AGCCAGTCAG CTACCGCTCG
CTCCAGGGCT GGGTCAGCAC CCTGCCCCTC GGCTTGGACC AGGTGCGGAT GCGCCGCACC
TTCGACACCG CAGCCCTGTC CGCGGCGTTC CCGTTCACGT CGCCCGATCT GCCGCCCGCC
GACCCGACCT CTCTGGCTCC GACCGGGGTG CTCTACGGGC TCAACGTCGC GAGCAACGGG
CTGGTCCACT GGGACCGGTT CGGCGACGTC GACAACCACA ACGCCGTCAT CCTCGGCCGC
AGCGGCGCCG GCAAGTCCTA CCTGGTCAAG CTCGAACTCC TGCGCAGTCT CTACCGGGGC
ATCGAGGTCC ACGTCGTCGA CCCGGAAGAC GAATACGCCC GGCTCGCCGC CGCGGTCGGC
GCCAGCTACC TGCACCTCGG CGCCGACGAG GTGCGGATCA ACCCGTTCGA CCTGCCGATC
CAGACCACCC CCGACGGGCG GCGCACCGCA CCGCGCGACG CGCTGGTGCG GCGCAGCCTG
TTCCTGCACA CCGTTATCGC CGTCCTGGTC GGCCAGCTGA GTGCGGCCGA ACGGGCAGCC
CTCGACGTCG CGATCACCGC CACCTACCAG GCCGCCGGGA TCAGCTCCGA CCCGCGCAGC
TGGAACCGGC CGGCACCGCT GCTGGCCGAC CTCGCCACCA CCCTGGCCAG CTCCAACGAC
CCGGCCGCGG TCGCGCTCGG CGCCCGGCTG CACCCGTTCA CCGCCGGGGC GTTCTCCGGC
CTGTTCAACG GGCCGACGAC CCGCCGCGGC GACGGCCACC TTGTCGTCTA CTCGCTGCGC
GACCTTGCGG ACGAGTTGAA GCCGATCGGG ACGCTACTCG TCCTCGACGC CGTGTGGCGG
CGAGTCTCCA ACCCCGCCGA CCGCCGTCCC CGCTTGGTCG TAGTCGACGA GGCATGGCTG
CTCATGCGCC AGCCCGCTGG CGCGGACTTC CTGTTCCGCA TGGCCAAGTC GTCCCGCAAG
CACTGGGCCG GGCTCACCGT GGCCACCCAG GACACCGCCG ACGTGCTCGC CACCGACCTC
GGCAAAGCGA TCGTCACCAA CGCCGCCACC CAGATCCTGC TCCGCCAGGC ACCGCAGGCC
ATCGACGAGA TCACCGCCAT CTTCGACCTG TCCCAGGGCG AACGGCAGTT CCTGCTGTCC
GCCGACCGCG GACAAGGACT CCTCGCGGCG GGGGCACAAC GAGTCGCTTT CCAAGCCCTG
GCCTCGCAGG TCGAGCACCG CCTGGTCACG ACCAACCCAG CCGAACTCGC CGCCGACCCC
GACAACGCGG CCGACGACGG CTTCCTCGAT CTCGCCGTGC CGGACGACCC GACCGATGAC
AACGGCCAGA TCTACCTCGA TGCCGCCTGA
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| Protein sequence | MSRRARRRTS AQAPSPSTRT VDAAAAAFVP DALTIAPRHL DVGGDYVATM AITGYPREVH
AGWLAPLVTY PGRVDVAVHV EPIDPVTAAN RLRRQLSKLE SGRQLGDEKG RLVDPQVEAA
TEDAYDLSAR VARGEGKLFR LGLYFTVHAA SEAELADEVA AVRALAASLL LDAKPVSYRS
LQGWVSTLPL GLDQVRMRRT FDTAALSAAF PFTSPDLPPA DPTSLAPTGV LYGLNVASNG
LVHWDRFGDV DNHNAVILGR SGAGKSYLVK LELLRSLYRG IEVHVVDPED EYARLAAAVG
ASYLHLGADE VRINPFDLPI QTTPDGRRTA PRDALVRRSL FLHTVIAVLV GQLSAAERAA
LDVAITATYQ AAGISSDPRS WNRPAPLLAD LATTLASSND PAAVALGARL HPFTAGAFSG
LFNGPTTRRG DGHLVVYSLR DLADELKPIG TLLVLDAVWR RVSNPADRRP RLVVVDEAWL
LMRQPAGADF LFRMAKSSRK HWAGLTVATQ DTADVLATDL GKAIVTNAAT QILLRQAPQA
IDEITAIFDL SQGERQFLLS ADRGQGLLAA GAQRVAFQAL ASQVEHRLVT TNPAELAADP
DNAADDGFLD LAVPDDPTDD NGQIYLDAA
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