| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1649 |
|---|
| Symbol | |
|---|
| ID | 3905928 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 1983653 |
|---|
| End bp | 1984522 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637878987 |
|---|
| Product | protoheme IX farnesyltransferase |
|---|
| Protein accession | YP_480754 |
|---|
| Protein GI | 86740354 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
|---|
| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCGGCGA AGGCCCGCGG CTATGTCGCC CTAATGAAGC TGCGCGTGGT CGAACTGCTG
CTCATCACCA CCGTCCCGGT CATGATGCTC GCCGAACGGG GCGTGCCGTC GCTCCGGCTG
ATCGCCGTGA CCCTGGTGGC GGGAACCCTC GCCGCCGGCA GCGCGAACAC GATCAACTGT
TACGTCGATC GTGACATCGA TCAGATGATG GGCCGCACGA AGCGCCGTCC GCTCGTGCGG
GCGACCGTCA CGCCCACGGA GGCGCTGACC TTCGGCATCG TGATCGGGAT CGTCTCGACG
CTGCTCTTCG GTTTCCTGGT CAACTGGCCC TCCGCGCTGC TGGCGGACGG GGCGATCGCC
TTCTACGTCT TCGTCTACAC CCTCGGGCTG AAGCGCCGCA CCCCGTCGAA CATCGTCATC
GGGGGCGCGG CCGGCTGCTT CCCCGTCCTG ATCGGATGGT CGGCGGTCAC GGGGACCGTC
GGCTGGGCCG CGGTGCTGCT GTTCGCCGTC GTCTTCTTCT GGACCCCGCC GCACTTCTGG
GCGTTGGCGA TGAAGTTCCG CGACGACTAC GCCGCGGCGG GCGTCCCCAT GCTGCCGGTC
GTCGCCTCCG TCCAGGTCGT CACCCGGCGG ATGCTGGGCT ACGCCTACGC GATGGTCGCC
GCCTCGCTCG CGGTCGCTCC CGTCGCCTCC ACCGGCCCGG TCTACCTCGT CGCCGCCGTC
GCGGTGGGAG CCTGGTTCCT GGTCGAGTCG CACCGGGTCG CCCGCCGGGC CCGGCACGGC
GAGGACCCGA GGCCGATGCG CCTGTTCCAC ATGTCGATCA CGTATCTGAC CCTGCTGTTC
GTGGCGATCG CCGTCACCGC TCTCGTCTGA
|
|---|
| Protein sequence | MSAKARGYVA LMKLRVVELL LITTVPVMML AERGVPSLRL IAVTLVAGTL AAGSANTINC
YVDRDIDQMM GRTKRRPLVR ATVTPTEALT FGIVIGIVST LLFGFLVNWP SALLADGAIA
FYVFVYTLGL KRRTPSNIVI GGAAGCFPVL IGWSAVTGTV GWAAVLLFAV VFFWTPPHFW
ALAMKFRDDY AAAGVPMLPV VASVQVVTRR MLGYAYAMVA ASLAVAPVAS TGPVYLVAAV
AVGAWFLVES HRVARRARHG EDPRPMRLFH MSITYLTLLF VAIAVTALV
|
|---|
| |