| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1622 |
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| Symbol | |
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| ID | 3905901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 1948335 |
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| End bp | 1950413 |
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| Gene Length | 2079 bp |
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| Protein Length | 692 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637878960 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_480727 |
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| Protein GI | 86740327 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGGTC GTTGCGACAC CCGGAGCGAC GTCCCGTTCG GTGCGGTTCG TCCCTGTTCG
GTCCGCCTGA TCCGCTCGGT CCGTTCGGTC GGGCTCATCG CGGGTCAGTG CGGGAGGAAG
CGGTTTTTGA TCAGCGGGCG TACGTTCGCC GGCCGTCGGC GTTTTCTCGT GGTCACCCCT
GCGATCGCGG CGGTGCTCTT CCTGCTCGCC GGGTGCATTC CGGGCTCCCC GGGTTATCTG
CGCTGGGGAA ACTGGCTGGG TCTGGTGGTC GCGGTCGGTA ACGCCGTCGT CGGGCTGGTG
GCCAACCCGA GAGGGCGCTG GATTCCGCCC GTCGCCGTCG CCTCGCTCGC CGCCGCGCTC
GCCTTCGCGC TGGCGAGCGC GGCGCCCGGC CGGAACGCGG ACACATACCT GACCTGGTTC
CCGGTGCTGT GCGCCTATGC CGCCCTGGTC CCCGTCGGCT GGGCCGTCGC CGGCACCGCG
GCCGTCTGCG CTGCCGTCGT CGCCGGCGTC ACCGCCCACG GCGGACTGGC CGAGGCCGCC
GCGCCCATGT TCTCCACCAT CGCCGCCGTC ATGCTCGTGG GCGCGGTGGC GAAGGCCCTG
TTCCGTGAGG GCCTGCTGCA GAACCGTTCC GATCCCCTCA CCCGCCTGGC CAACCGGGGC
GGGACGATGG AAATCGGGCA GTCCGCCGTT GCGAAGATCA ATGCCGCGGG GAACGAGGCT
GTCCTCGTCC TGGTGGACCT CAACCGGTTT CACGAGGTCA ACGATGCGCT CGGTCACCTC
GGCGGCGACC AGCTGCTGAG GATGATCGCT GAGACGTTGC CGACCCTGAC CCCGAGGCCG
GTGTTCGTCG GTCGGGCCGG CGGGGACGAG TTCGCGCTGG TGTTCCGCGG GCCCGAGATC
ATCCCGGCGC CGCCCGCTTC ATCCGTCTCA TCTGCCTCGC CCCCCTCATC CACCTCATCT
GCTTCACCTG TCTCGCTCGG CCCGTCGGGC GCGCCGGCCG TCCGCGGCCC CCTGCCCGCG
GCCATAGCCG CCGGGCGGCG GCGCACCCTG GGCCGGCGGG TCCTCCGCCA GATCCAGGGG
CCCTTTCAGG TCTGCGGGGT CGACGTCGAG GTGGACGCCT CGGTGGGCAT CGCGGTGGCC
CCCCGCGACG GCGCGACCAT GGCCACCCTG ATGAGCTGCG CCGATGCGGC CCTGCTGCGG
GCCAAGCGGG TCGGGGAGAG CGTGGGCCTG TGGGATGCCG GCATCGCCGG GGTGCGGCCC
GAGGAGATCG CGTTGAACGC CCAGTTGCGC GCCGCGATCG GCCGCGACGA GCTCGTCCTG
TACTACCAGC CGGTCCAGTC AGCTCGGACC GGTGGGATCG TCGGTGCCGA GGCGTTGCTG
CGGTGGCGAC ATCCGAGCCG TGGGCTGCTC CCCCCCGGCG AGTTCCTGCC GATCGCCGAG
CGGTCCCCCC TGATCGCGGA CCTGACCCGG TGGGTTCTCG ACGAGGCACT GCGGCAGTGT
GCCGCCTGGG ACGCGGGGGG CCTGCACCTG CCGGTGTCGG TCAATCTCTC CCCCCGGATG
CTGGTGATCG ACGATCTTCC CCGGGTGGTC TCGGACTCGA TCGCCGCGCA CCGGCTGGCC
CCCGACGTCC TCACCCTGGA GATCACCGAG AGCGCCCTGG TCACCCAGCC CGCGCGTGCG
GCGACGATGC TGGGTCAGTT GCGCTCCCAC GGCGTGGCGC TCTCCCTCGA CGACTTCGGC
ACCGGGTATA GCTCGATGGA GATCCTCAAG ACGTTGCCGT TTGACGAGGT CAAGATCGAC
CGGGGGTTCG TCACGGACGT CCGGGGGAGC CTGCCCGACG CCGCGATCGT GCGTTCCGTG
CTCGATCTGG GACATCGCCT GGGGCTGCGG GTCGTCGGTG AGGGCATCGA GGACGAACGG
ACCCTGACGA TGATGGTCGA CTTCGGCTGC GATCTGCTGC AGGGAGAGGC GATCTCGCCT
CCGCTGCCGG CGGAGCGCGT CCGCGAGCTG CTGCGGACCC GGGCCGCGAA GGCGGGCAAG
GTGGTCCCGG GCGGTGACGT TCGATGTCGC CGGGCGTGA
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| Protein sequence | MRGRCDTRSD VPFGAVRPCS VRLIRSVRSV GLIAGQCGRK RFLISGRTFA GRRRFLVVTP
AIAAVLFLLA GCIPGSPGYL RWGNWLGLVV AVGNAVVGLV ANPRGRWIPP VAVASLAAAL
AFALASAAPG RNADTYLTWF PVLCAYAALV PVGWAVAGTA AVCAAVVAGV TAHGGLAEAA
APMFSTIAAV MLVGAVAKAL FREGLLQNRS DPLTRLANRG GTMEIGQSAV AKINAAGNEA
VLVLVDLNRF HEVNDALGHL GGDQLLRMIA ETLPTLTPRP VFVGRAGGDE FALVFRGPEI
IPAPPASSVS SASPPSSTSS ASPVSLGPSG APAVRGPLPA AIAAGRRRTL GRRVLRQIQG
PFQVCGVDVE VDASVGIAVA PRDGATMATL MSCADAALLR AKRVGESVGL WDAGIAGVRP
EEIALNAQLR AAIGRDELVL YYQPVQSART GGIVGAEALL RWRHPSRGLL PPGEFLPIAE
RSPLIADLTR WVLDEALRQC AAWDAGGLHL PVSVNLSPRM LVIDDLPRVV SDSIAAHRLA
PDVLTLEITE SALVTQPARA ATMLGQLRSH GVALSLDDFG TGYSSMEILK TLPFDEVKID
RGFVTDVRGS LPDAAIVRSV LDLGHRLGLR VVGEGIEDER TLTMMVDFGC DLLQGEAISP
PLPAERVREL LRTRAAKAGK VVPGGDVRCR RA
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