| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1613 |
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| Symbol | |
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| ID | 3903748 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 1934288 |
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| End bp | 1936054 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637878950 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_480718 |
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| Protein GI | 86740318 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.560816 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCCCG TATACCCGAT CACCCACGAT AGGTGGTACA CGCTGGCGAG GACGCCCGCC
GTCGAGTTCT TCCAGACGAG GACTCGGGAA CTTGCCCCGC AGCGGCCAGC CGAATCCGGC
AAGACCTGGG GAAAACTGGT CGTAAATCCG GAGACCCCCC GAATCGCGTC GATTTTCCTC
GACGCCGCTG CCCAACTGGC CACTGCGGCC GCCTGCTTCC GGACCGCCCG GCAGGTTCGC
GGGACGGAGC GCCGCCGGCG GTTCGCCCGC CTCGCCGCTG GCGGCGTGCT GGTCGCCAAC
CTCGCGACGG CGGCGACGTT CCTCGCCGGC GGCTTCCTGA CTGGCCGCAT GTCCCCGAGC
TATGCCATCT TCCTCGTTCT CTACGGGGTG GCCCTGGCCG GGCTGCTGTC CCTACCCACC
GCACCGGTGG AAGGCCAGGG CGAGAACACC AGGACCGCGC GACACAGCGG ATACCGCTGG
CATACGATCA CCCTGCTGGA CTGTGTGCTG ATCGTCGGCT CGATCATCCT GCTGGCGTGG
GGGACGACTC TCGCCGCGCT CGTCCCGGCC GGCCCGCCCG ACCCCATCCA GCTCTTGGCC
GCCCTGCTCC ACCCGGTCGC CAGCCTGATC CTCGCCACGG CGGTGCTGCT GATCACCTGC
TTCCGCCGGC CGCGTTCCCC GGCGGCGTCG GTACTGCTCA GCACGGGCCT GCTGATCGAC
GGACTCACCA GCAACATCTC CGTCTACAGC ACCGCGCCGG ACAGCCACCA CCTTCCCCCC
TGGGCCATGA TCGGATTCAC CCTCGCCTTT ATGATGATCT TCCTTGCCGC TCTGCTACCG
GCGCGCACGC ACCCGGACAA CCCCACACCC GACAGCCTCA CGACCGACAG CCTCACGACC
GACAGCCTCA CCCCGGGCGG CCCCCGGGCG GTGTGGGCGC ACGCCGTGCT GCCTTACGCC
GTGCTCGGTG CGGCCGGCCT GCTGATCCTG GGCAAACTGT CGACCGGTGC GCAGCTCGAC
CGGTTCGAGG CGTACGGCAT GGTCGGACTG CTGCTGGTGG CGCTGGTCCG GCAGATGGTC
ACCCTGGCGG AGAGTAACCG ACTGTTGGCC GAGGTACGCC AGCGCGCACG GCAGCTTCAC
CATCAGGCGT TCCACGACCC GTTGACCGGC CTGGCGAACC GGGCGCTGTT CACTCGGCGG
CTGCAACGAG CCCTCACCCA CGACCCCGAC AACCCCGACA ACCCCGACGC CTGCCACGCC
GGCGACTCCG GGACGGTGTC CGTCCTGTTT TTGGATCTCG ACGGGTTCAA GCTGGTGAAC
GACACGCTCG GCCATGCCGC CGGGGACGAA CTCCTCAAAA TCAGCGCGGA GCGACTGCGG
GCGGACACCC GCGCGGTGGA CACCGTCGCC CGGCTCGGCG GGGACGAGTT CGCCATCATT
CTCGGCAGCG GCGGCGTCGA CGCCCGGAAG GTGGGTGAGC GGCTCGCGAT GGCAGTCCAG
GAGCCGTGCC TGCTGGCCGG GCAGATCTAC ACCCCGCGGG CCAGCTTCGG CCTAGTCACG
CTCGACGGCT CCACCACCCG GCCGGCCAGT CCCGACAGCC TGCTGCACCA GGCCGACCTG
GCCATGTACG CGGCCAAGCG GGAACGCGCG GGCAGGCTGG TCGTCTACCG GCCGGAGCTG
TCCGCCCTCC CCGAGCACCG CCACCCGGAC CCACCCAGCC AGGACGACCC GGTGGGCGCC
TACGGCCGAG TAGTAGGCCT GATGTGA
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| Protein sequence | MTPVYPITHD RWYTLARTPA VEFFQTRTRE LAPQRPAESG KTWGKLVVNP ETPRIASIFL
DAAAQLATAA ACFRTARQVR GTERRRRFAR LAAGGVLVAN LATAATFLAG GFLTGRMSPS
YAIFLVLYGV ALAGLLSLPT APVEGQGENT RTARHSGYRW HTITLLDCVL IVGSIILLAW
GTTLAALVPA GPPDPIQLLA ALLHPVASLI LATAVLLITC FRRPRSPAAS VLLSTGLLID
GLTSNISVYS TAPDSHHLPP WAMIGFTLAF MMIFLAALLP ARTHPDNPTP DSLTTDSLTT
DSLTPGGPRA VWAHAVLPYA VLGAAGLLIL GKLSTGAQLD RFEAYGMVGL LLVALVRQMV
TLAESNRLLA EVRQRARQLH HQAFHDPLTG LANRALFTRR LQRALTHDPD NPDNPDACHA
GDSGTVSVLF LDLDGFKLVN DTLGHAAGDE LLKISAERLR ADTRAVDTVA RLGGDEFAII
LGSGGVDARK VGERLAMAVQ EPCLLAGQIY TPRASFGLVT LDGSTTRPAS PDSLLHQADL
AMYAAKRERA GRLVVYRPEL SALPEHRHPD PPSQDDPVGA YGRVVGLM
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