Gene Francci3_1579 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_1579 
Symbol 
ID3903714 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp1893617 
End bp1894480 
Gene Length864 bp 
Protein Length287 aa 
Translation table11 
GC content64% 
IMG OID637878916 
Productglycosyl transferase family protein 
Protein accessionYP_480684 
Protein GI86740284 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0463] Glycosyltransferases involved in cell wall biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.21948 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.274424 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCTGGTT CGGGTGATTC GCCATCGGTA AGTGTGGTGA TTCCGGCGCT CAACGAGGCG 
CGGAATCTGC GGGAAGTATT CGGCCGACTT CCGGTGGACG CCGAAATAAT CCTGGTGGAC
GGGAACTCCA CCGATGACAC CGTCCGACTG GCCCGCGAGC TACGCCCCGA CGTGGTCGTC
GTCCGCCAGA CCCGATACGG CAAGGGCAAC GCCATGGCCT GCGGCTTTGC CGTGGCATCG
GGGGACATCG TGGTCACGCT CGACGCCGAC GGCTCGGCCG ACCCGGCCGA GATACCCTCC
TTCGTCGCGG CCCTCGTCCA GGGCGCCGAC TTCGTCAAGG GAACCCGATT CGCCCACCGT
GGCGGCAGCA ACGACATTAC CCTGCTGCGT ACTCTTGGAA ATCTCTTCTT CTGTCATCTG
GTCAACCTGC TCTTCCACCG CCGGTTCACC GACCTGTGCT ACGGCTACAA CGCATTCCGG
CGAGATTGTC TGCCGATGCT CGGGCTGATG CCGGGAGAAA CCGACGGCAT TCGGCGGCAT
GGCGACGGCT TCGAGATCGA AACCTTGATC ACCCTCCGTG CGACCAAGGC CTGCCTGCGG
GTCACCGAGG TCGGCAGCTT TGAGCACAAG CGCCTTCACG GCGCGAGCAA CCTGAATGCG
GGCCGGGATG GTATGCGCGT CCTGCGGACC ATCCTCGTCG AATGGTCGGA AAACCTTACC
GCCCGGTCAC GAAACCGCGC CAGGTGGGAC GGCATGCTGC TCAGCAGTCC CGGTCAACCG
GTATCGACCA TCGTCAGCCA GCGACGTCCG GGCGACCTTC CCCATGGCCG GCGCAGGACA
ACCGGCGCGA CGGAATACGC GTGA
 
Protein sequence
MSGSGDSPSV SVVIPALNEA RNLREVFGRL PVDAEIILVD GNSTDDTVRL ARELRPDVVV 
VRQTRYGKGN AMACGFAVAS GDIVVTLDAD GSADPAEIPS FVAALVQGAD FVKGTRFAHR
GGSNDITLLR TLGNLFFCHL VNLLFHRRFT DLCYGYNAFR RDCLPMLGLM PGETDGIRRH
GDGFEIETLI TLRATKACLR VTEVGSFEHK RLHGASNLNA GRDGMRVLRT ILVEWSENLT
ARSRNRARWD GMLLSSPGQP VSTIVSQRRP GDLPHGRRRT TGATEYA