| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1569 |
|---|
| Symbol | |
|---|
| ID | 3904801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 1881955 |
|---|
| End bp | 1883424 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637878906 |
|---|
| Product | O-antigen polymerase |
|---|
| Protein accession | YP_480674 |
|---|
| Protein GI | 86740274 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.497135 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCG GCTCTCTCGT CGGCCGGGCG GCGCCGGGGG TCGGGCCGTT CGGTACCGGC
CAGGCACCCG GCGTCGCCGG GCCGGTGCTC GCCGCGGTCG CGTTCGGATC CGCCACCGTA
GCGGCGGCGA TGGTGCTCGG GCCGGTCGGG CCGGCCGTGG TGCTGGCCGT CCCGGCCGTG
GCGGTACCCC TGCTGGCGAG TCGGCGGGAC GCGGTGACGC TGCTGACATC GATGGTCTTC
GTTCTCTTTG CCGTGCCGGC GACCTACCGG CTCCCCCCGC TGGGGAAGTT GACCGTGCCC
GTCGGCCTCT GCTGTCTTGC CGGCTGGCTG GTTCACCAGG CCGCACGACG TGCCCGCTTC
GACCCGGTGT TCCAGCCGGT GCGGGCCGCG ACGCTGGTAC TCGTATGGGT TCTCACGCTC
AGTTTCGCGA TGATGTTCAC CCGCGTGGTG GAGGCGACAG AGGTCAGCTC CGCTCATCGC
AGTCTCGTGA CGGTGGTGGC ACAGGCCGGG GTGACGCTGT TGGCCGCCGA TGCGATCCGG
TGCCGGACCC GGCTGGACAG CCTGCTGCGC CGGGTGGTGC TGGGCGCCAC CTTCATGGCC
GCCATCGGCG GGATCGAGTT TCTGACCGGT CGTAACTACA GCGCCGTCCT GGTCCCCCCG
GGACTGTCGC TCAGTCCGGA CGTCGATCGC ATTGACGTCC GGTCCGGCTT CGAGCGGGTC
GCCGCGACGG CCGTGCATCC GATCGAGTTC GGGGTTGTCC TGGCCGTGGT GTTGCCGTTG
GCCCTGCACT ACGCCATTGC CGCCCGCGGG TGGGCGCGGG TCGGTGCCTG GGCCCAGGTC
GCCGTCATCG GGGCCGTCCT GCCGATGAGC GTCTCGCGAA GCACCGCCGT GAGCCTCGCC
GTGGCGATCC TGACCCTGAC GGCGATCTGG CCGGTTCGCC GCCGCCTCAA CGGCCTGCTG
GCGCTGGCCG GGTCCGTCCT CGTCCTGCAC ACGGTGTTTC CCGGTCTGAT CGAGGCGACC
GTCTCGCTGT TCCTGCGGGC CGACGCGGAC CCCAGCGTGA CCGGCCGCAC CGAGGACTAT
GCCCCGGTCT GGAAGTTGTT CACGCAAAGG CCGCTCCTCG GCCGTGGGCT GGGCACGTTC
ACCCCCCACC AGTACTTCTA CCTTGACAAT CAGCTACTCG GCTCGGTGCT GGAGACCGGA
GTCGTCGGGA CAACCGTGCT GCTGGTCTGG GTCGCCGTCG GTCTCTCGGT GGCCCGTGGG
GCGCGGCGGT GGGCCCGGGA ACAGCGTGAC CGGGAGCTCG GCCAGGCGTT GACGGCCTCG
ATCCTCGCCG GGGTCGCCAG TTTCCTCACC TTCGACGCCC TGAGCTTCGC GTTGCTCGCC
GGCCTGCTGT TCCTGCTCAT CGGCTGCGCC GGAGCACTCT GGCGGATGAC CGCCGCACCG
GCGGTCCTGG CCCCCGGGGG GCAGCGGTGA
|
|---|
| Protein sequence | MTAGSLVGRA APGVGPFGTG QAPGVAGPVL AAVAFGSATV AAAMVLGPVG PAVVLAVPAV
AVPLLASRRD AVTLLTSMVF VLFAVPATYR LPPLGKLTVP VGLCCLAGWL VHQAARRARF
DPVFQPVRAA TLVLVWVLTL SFAMMFTRVV EATEVSSAHR SLVTVVAQAG VTLLAADAIR
CRTRLDSLLR RVVLGATFMA AIGGIEFLTG RNYSAVLVPP GLSLSPDVDR IDVRSGFERV
AATAVHPIEF GVVLAVVLPL ALHYAIAARG WARVGAWAQV AVIGAVLPMS VSRSTAVSLA
VAILTLTAIW PVRRRLNGLL ALAGSVLVLH TVFPGLIEAT VSLFLRADAD PSVTGRTEDY
APVWKLFTQR PLLGRGLGTF TPHQYFYLDN QLLGSVLETG VVGTTVLLVW VAVGLSVARG
ARRWAREQRD RELGQALTAS ILAGVASFLT FDALSFALLA GLLFLLIGCA GALWRMTAAP
AVLAPGGQR
|
|---|
| |