| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1557 |
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| Symbol | |
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| ID | 3904789 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 1866971 |
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| End bp | 1867732 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637878894 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_480662 |
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| Protein GI | 86740262 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.530107 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAGATCA CGGATTCAGT CGCCGTGGTG ACCGGCGGGG CTTCCGGCCT CGGCCTTGCC
ACCGCCACCC GGCTCATCGA CGCTGGTGCC AGCGTGGTCC TCCTCGACCT CCCGTCCTCG
AACGGCGCGG CGGTCGCGGA GAAGTTCGGC AGTTCGGTGC GATTCAGCCC CGGCGACGTC
ACCTCCGAGC AGGACGTGAC GGCAGCCCTG GACGTGGCTG CCGAGCTGGG CCCGCTGCGC
ATCGCCGTCA ACTGCGCCGG CATCAGCAAC GCCGCCAAGA CGCTGAGCAA GGAAGGGCCG
TTCCCACTGG CCATCTTCGA GCGGGTCGTC AAGGTCAACC TGATCGGCTC GTTCAACGTC
ATCCGACTCG CGGCCGAGCG GATCAGCAGG ACCGAGGAGA TCGACGGCGA GCGTGGCGTC
ATCATCAACA CCGCGTCCGT GGCGGCGTTC GAGGGCCAGA TCGGGCAGGC CGCCTACTCG
GCGTCCAAGG GCGGCATCGT CGGCATGACG CTGCCGATCG CCCGCGACCT CGCCAGTCTG
AAGATCCGCG TGGTGACCAT CGCCCCCGGC CTGTTCGACA CCCCGCTGCT CGCCTCGCTG
CCGGAGCCGG CTCGCGTCTC TCTCGGCCAG CAGGTCCCGC ACCCCTCGCG CCTGGGCTCC
CCCGACGAGT ACGGCCTGCT CGCGACCCAG ATCATCGCGA ACCCCATGCT CAACGGCGAG
ACCATCCGCC TCGACGGTGC CATCCGGATG GCACCCCGCT GA
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| Protein sequence | MQITDSVAVV TGGASGLGLA TATRLIDAGA SVVLLDLPSS NGAAVAEKFG SSVRFSPGDV
TSEQDVTAAL DVAAELGPLR IAVNCAGISN AAKTLSKEGP FPLAIFERVV KVNLIGSFNV
IRLAAERISR TEEIDGERGV IINTASVAAF EGQIGQAAYS ASKGGIVGMT LPIARDLASL
KIRVVTIAPG LFDTPLLASL PEPARVSLGQ QVPHPSRLGS PDEYGLLATQ IIANPMLNGE
TIRLDGAIRM APR
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