Gene Francci3_1552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_1552 
Symbol 
ID3904784 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp1860507 
End bp1862726 
Gene Length2220 bp 
Protein Length739 aa 
Translation table11 
GC content70% 
IMG OID637878889 
Producthelicase RecD/TraA 
Protein accessionYP_480657 
Protein GI86740257 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.338597 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGGAC GCGAACCCTT CCGCGGCGCG GTCCTCGATG CGGTGCTGGA ACGGATCACC 
TATGCCAACG AGGAGACCGG CTACACGGTC GCGCGGGTTG ACACCGGGCG CGGCGGTGAC
CTGGTGACCG TCGTCGGGGC GTTGCTCGGC GCGCAGCCGG GGGAGTCGCT ACGGATGCGG
GGGCGATGGG GTTCGCACCC GCAGTACGGC CGCCAGTTCC AGGTCGAGGA TTACACGACC
GTGCTGCCGG CGACCGTCCA GGGCGTGCAG CGCTATCTCG GCTCGGGCCT TATCAAGGGC
ATCGGTCCGC GCCTGGCCGA ACGCATCGTC GAGCATTTCG GGGTCGCGGC GCTGGACGTC
ATCGAAAAGG AGCCGGAACG ACTCATCGAG GTGCCGAAGC TCGGCCCGAA GCGTACCAGG
GCGATCGCCG AGGCGTGGGA GGAACAGAAG GCCATCAAGG AGGTGATGGT CTTTCTTCAG
GGGGTGGGTG TGTCCACCTC GCTGGCGGTG CGGATCTACA AACAGTACGG GGACGCGTCG
ATCGGTGTGG TGCGCAATGA GCCCTACCGG CTGGCCACGG ACGTCTGGGG CATCGGGTTC
CGCACCGCGG ACACCATCGC GAAGGCGGTG GGGATTCCGC ATGACAGTCC GCAGCGGATC
AAGGCTGGCC TGCTGTTCAC GCTGTCCGAG GCCACCGACG GCGGTGGCCA CTGCTTTCTG
CCCGAGCCCC GGCTCATCAG CGACGCCGTG CAGATTCTCC AGGTCGACAC CGGTGACGTC
ATCGAGTGCC TGGGGGAGCT GGTCGCCGAG GACGGGGTCG TCCGGGAGGA GGTTCCAAGC
GAGGATCCGG CGACGCCGAC GGCCGCGATC TACCTGGTGC CGTTCCACCG GGCCGAGATA
TCCGTTGCCG GCCAGTTGCG CCGCCTGCTG AATACCGGCG CGGACCGGTT GGCCGCCTTC
GCCTCGGTGG ACTGGGACCG GGCGTTGGGC TGGCTGCGGG AGCGGACCGG GGTCGAGCTC
GCGCCGGCCC AGCGCGATGC GGTGCAGCTT GCCCTGACGT CCAGGGTCGC CGTGCTGACG
GGCGGACCGG GCTGCGGCAA GAGTTTCACC GTCCGCTCCA TCGTGACGCT CGCACTGGCC
CGGCAGGCGA AGGTGATCCT CGCCGCGCCG ACCGGCCGGG CCGCGAAGCG GCTGACCGAG
CTGACCGGGC ACGAGGCATC GACGGTGCAC CGGCTGCTGG AGCTGCGGCC GGGCGGTGAC
GCCGCCTTCG ACCGGGACCG CCCGCTCGAC GCCGACCTGA TCGTCGTTGA CGAGGCGTCG
ATGGTCGACC TGCTACTGGC GAACAAGCTT GCCAAGGCGG TTCCGCCCGG CGCGCATCTG
CTGCTGGTCG GCGACGTCGA CCAGCTGCCG TCGGTCGGTG CCGGCCAGGT GCTACGCGAC
CTGCTCGCCG AGGGGACGCC GATCCCGCAT GTCCGGCTCA CCCAGGTCTT CCGAGCGGCG
ACCGAGTCCG GGGTGGTGAC CAACGCGCAC CGCATCAACC GTGGTGACTA TCCGCTGGTC
CGGGGACTGC CCGACTTCTT CTTGTTCGCC GCCGAGGAGG CGGAGGAGGC GGCGAAAATC
ACCGCGGAGG TGGTCGCCCG GCGGATTCCG GCGAAGTTCG GGCTTGATCC GCGCCGGGAC
GTGCAGGTAC TGACCCCGAT GCACCGCGGC CCGGCGGGGG CCGGCGCGCT GAACACCCTG
CTGCAGGAGG CCCTGACGCC GTCCCGCCCG AACGTGGCCG AGCGGCGCTT TGGCAGCCGG
ACGTTCCGGG TCGGCGACAA GGTTACGCAG GTGCGCAACA ACTACGACAA GGGCGCGAGC
GGGGTCTTCA ACGGCACTCT CGGCGTGGTC ACCGCGCTGG ATGTGGAGAA CCAGACGCTC
ACCATCCGGA CCGACGAGGA CGAGGACATC GACTACGACT TCGGGGAGCT CGACGAGCTG
ACCCACGCCT ACGCGGTGAC GATCCACCGC TCCCAGGGCA GTGAGTACCC CGCGGTCGTC
ATCCCGCTCA CCACCAGCGC CTGGATGATG CTGCAACGCA ATCTGCTCTA CACGGCCGTC
ACCCGGGCGA AGAAGCTGGT CGTGCTGGTG GGATCCCGCC GGGCGATCGG CCAGGCGGTG
CGGGCCGCCG GTCACGGCCA GCGGCACACC GCGCTCGACC ACCGGCTGCG TAGCGGGTGA
 
Protein sequence
MIGREPFRGA VLDAVLERIT YANEETGYTV ARVDTGRGGD LVTVVGALLG AQPGESLRMR 
GRWGSHPQYG RQFQVEDYTT VLPATVQGVQ RYLGSGLIKG IGPRLAERIV EHFGVAALDV
IEKEPERLIE VPKLGPKRTR AIAEAWEEQK AIKEVMVFLQ GVGVSTSLAV RIYKQYGDAS
IGVVRNEPYR LATDVWGIGF RTADTIAKAV GIPHDSPQRI KAGLLFTLSE ATDGGGHCFL
PEPRLISDAV QILQVDTGDV IECLGELVAE DGVVREEVPS EDPATPTAAI YLVPFHRAEI
SVAGQLRRLL NTGADRLAAF ASVDWDRALG WLRERTGVEL APAQRDAVQL ALTSRVAVLT
GGPGCGKSFT VRSIVTLALA RQAKVILAAP TGRAAKRLTE LTGHEASTVH RLLELRPGGD
AAFDRDRPLD ADLIVVDEAS MVDLLLANKL AKAVPPGAHL LLVGDVDQLP SVGAGQVLRD
LLAEGTPIPH VRLTQVFRAA TESGVVTNAH RINRGDYPLV RGLPDFFLFA AEEAEEAAKI
TAEVVARRIP AKFGLDPRRD VQVLTPMHRG PAGAGALNTL LQEALTPSRP NVAERRFGSR
TFRVGDKVTQ VRNNYDKGAS GVFNGTLGVV TALDVENQTL TIRTDEDEDI DYDFGELDEL
THAYAVTIHR SQGSEYPAVV IPLTTSAWMM LQRNLLYTAV TRAKKLVVLV GSRRAIGQAV
RAAGHGQRHT ALDHRLRSG