Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_1552 |
Symbol | |
ID | 3904784 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 1860507 |
End bp | 1862726 |
Gene Length | 2220 bp |
Protein Length | 739 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637878889 |
Product | helicase RecD/TraA |
Protein accession | YP_480657 |
Protein GI | 86740257 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR01448] helicase, putative, RecD/TraA family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.338597 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATCGGAC GCGAACCCTT CCGCGGCGCG GTCCTCGATG CGGTGCTGGA ACGGATCACC TATGCCAACG AGGAGACCGG CTACACGGTC GCGCGGGTTG ACACCGGGCG CGGCGGTGAC CTGGTGACCG TCGTCGGGGC GTTGCTCGGC GCGCAGCCGG GGGAGTCGCT ACGGATGCGG GGGCGATGGG GTTCGCACCC GCAGTACGGC CGCCAGTTCC AGGTCGAGGA TTACACGACC GTGCTGCCGG CGACCGTCCA GGGCGTGCAG CGCTATCTCG GCTCGGGCCT TATCAAGGGC ATCGGTCCGC GCCTGGCCGA ACGCATCGTC GAGCATTTCG GGGTCGCGGC GCTGGACGTC ATCGAAAAGG AGCCGGAACG ACTCATCGAG GTGCCGAAGC TCGGCCCGAA GCGTACCAGG GCGATCGCCG AGGCGTGGGA GGAACAGAAG GCCATCAAGG AGGTGATGGT CTTTCTTCAG GGGGTGGGTG TGTCCACCTC GCTGGCGGTG CGGATCTACA AACAGTACGG GGACGCGTCG ATCGGTGTGG TGCGCAATGA GCCCTACCGG CTGGCCACGG ACGTCTGGGG CATCGGGTTC CGCACCGCGG ACACCATCGC GAAGGCGGTG GGGATTCCGC ATGACAGTCC GCAGCGGATC AAGGCTGGCC TGCTGTTCAC GCTGTCCGAG GCCACCGACG GCGGTGGCCA CTGCTTTCTG CCCGAGCCCC GGCTCATCAG CGACGCCGTG CAGATTCTCC AGGTCGACAC CGGTGACGTC ATCGAGTGCC TGGGGGAGCT GGTCGCCGAG GACGGGGTCG TCCGGGAGGA GGTTCCAAGC GAGGATCCGG CGACGCCGAC GGCCGCGATC TACCTGGTGC CGTTCCACCG GGCCGAGATA TCCGTTGCCG GCCAGTTGCG CCGCCTGCTG AATACCGGCG CGGACCGGTT GGCCGCCTTC GCCTCGGTGG ACTGGGACCG GGCGTTGGGC TGGCTGCGGG AGCGGACCGG GGTCGAGCTC GCGCCGGCCC AGCGCGATGC GGTGCAGCTT GCCCTGACGT CCAGGGTCGC CGTGCTGACG GGCGGACCGG GCTGCGGCAA GAGTTTCACC GTCCGCTCCA TCGTGACGCT CGCACTGGCC CGGCAGGCGA AGGTGATCCT CGCCGCGCCG ACCGGCCGGG CCGCGAAGCG GCTGACCGAG CTGACCGGGC ACGAGGCATC GACGGTGCAC CGGCTGCTGG AGCTGCGGCC GGGCGGTGAC GCCGCCTTCG ACCGGGACCG CCCGCTCGAC GCCGACCTGA TCGTCGTTGA CGAGGCGTCG ATGGTCGACC TGCTACTGGC GAACAAGCTT GCCAAGGCGG TTCCGCCCGG CGCGCATCTG CTGCTGGTCG GCGACGTCGA CCAGCTGCCG TCGGTCGGTG CCGGCCAGGT GCTACGCGAC CTGCTCGCCG AGGGGACGCC GATCCCGCAT GTCCGGCTCA CCCAGGTCTT CCGAGCGGCG ACCGAGTCCG GGGTGGTGAC CAACGCGCAC CGCATCAACC GTGGTGACTA TCCGCTGGTC CGGGGACTGC CCGACTTCTT CTTGTTCGCC GCCGAGGAGG CGGAGGAGGC GGCGAAAATC ACCGCGGAGG TGGTCGCCCG GCGGATTCCG GCGAAGTTCG GGCTTGATCC GCGCCGGGAC GTGCAGGTAC TGACCCCGAT GCACCGCGGC CCGGCGGGGG CCGGCGCGCT GAACACCCTG CTGCAGGAGG CCCTGACGCC GTCCCGCCCG AACGTGGCCG AGCGGCGCTT TGGCAGCCGG ACGTTCCGGG TCGGCGACAA GGTTACGCAG GTGCGCAACA ACTACGACAA GGGCGCGAGC GGGGTCTTCA ACGGCACTCT CGGCGTGGTC ACCGCGCTGG ATGTGGAGAA CCAGACGCTC ACCATCCGGA CCGACGAGGA CGAGGACATC GACTACGACT TCGGGGAGCT CGACGAGCTG ACCCACGCCT ACGCGGTGAC GATCCACCGC TCCCAGGGCA GTGAGTACCC CGCGGTCGTC ATCCCGCTCA CCACCAGCGC CTGGATGATG CTGCAACGCA ATCTGCTCTA CACGGCCGTC ACCCGGGCGA AGAAGCTGGT CGTGCTGGTG GGATCCCGCC GGGCGATCGG CCAGGCGGTG CGGGCCGCCG GTCACGGCCA GCGGCACACC GCGCTCGACC ACCGGCTGCG TAGCGGGTGA
|
Protein sequence | MIGREPFRGA VLDAVLERIT YANEETGYTV ARVDTGRGGD LVTVVGALLG AQPGESLRMR GRWGSHPQYG RQFQVEDYTT VLPATVQGVQ RYLGSGLIKG IGPRLAERIV EHFGVAALDV IEKEPERLIE VPKLGPKRTR AIAEAWEEQK AIKEVMVFLQ GVGVSTSLAV RIYKQYGDAS IGVVRNEPYR LATDVWGIGF RTADTIAKAV GIPHDSPQRI KAGLLFTLSE ATDGGGHCFL PEPRLISDAV QILQVDTGDV IECLGELVAE DGVVREEVPS EDPATPTAAI YLVPFHRAEI SVAGQLRRLL NTGADRLAAF ASVDWDRALG WLRERTGVEL APAQRDAVQL ALTSRVAVLT GGPGCGKSFT VRSIVTLALA RQAKVILAAP TGRAAKRLTE LTGHEASTVH RLLELRPGGD AAFDRDRPLD ADLIVVDEAS MVDLLLANKL AKAVPPGAHL LLVGDVDQLP SVGAGQVLRD LLAEGTPIPH VRLTQVFRAA TESGVVTNAH RINRGDYPLV RGLPDFFLFA AEEAEEAAKI TAEVVARRIP AKFGLDPRRD VQVLTPMHRG PAGAGALNTL LQEALTPSRP NVAERRFGSR TFRVGDKVTQ VRNNYDKGAS GVFNGTLGVV TALDVENQTL TIRTDEDEDI DYDFGELDEL THAYAVTIHR SQGSEYPAVV IPLTTSAWMM LQRNLLYTAV TRAKKLVVLV GSRRAIGQAV RAAGHGQRHT ALDHRLRSG
|
| |