| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1417 |
|---|
| Symbol | |
|---|
| ID | 3903398 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 1707364 |
|---|
| End bp | 1708872 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637878754 |
|---|
| Product | UDP-N-acetylmuramate--L-alanine ligase |
|---|
| Protein accession | YP_480523 |
|---|
| Protein GI | 86740123 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
|---|
| TIGRFAM ID | [TIGR01082] UDP-N-acetylmuramate--alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0845142 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGGTC AGCGCACCCA GCACGTCCAT TTCCTCGGCA TCGGAGGCAG CGGCCTGTCT
CCGCTGGCCC AGATCCATCT CGCGGGCGGC GGGACGGTGA GCGGCAGTGA CTCCGAAGAC
TCGCCCCGGG TGGCGACCCT ACGCGCACGG GGGGTACCGA TCCGGATCGG GGCCACGCCC
GGTCCGGCCG CCTTCGCCGC CGAGCTCGCC GGTGCGGATG TCGTGGTCGC GTCCAGTGCG
CTGCCCGACG ACCATCCGGA GATCGTCGCC GCCCGCGCGC TCGGTCTGCC CGTGCGCCGC
CGTTCGGAAT GGCTACCGGA GCTCACCGCC GGCTACCGGC TGGTCGCCGT CGCCGGTTCG
CACGGCAAGT CGACCACCTC GGCGATGCTC ACCCTGGTCC TGCGCGCCGC CGGGCTGGAT
CCCACGGCGG TCATCGGCGC GGAGGTGTCA CAGCTGGGAG GGAACGCGCT GGCCGGCTCC
GGCGACGTCT TCGTCCTGGA GTCCGACGAG TACGGCGGCG CCTTCGCGGG CCTCGACCCG
AGCATCGCCG TCATCACCAA CGTCGAGTGG GAGCACCCTG ACGTCTTCCC CGACGAGGCA
TCGGTCCGGA CGGCCTTCGC CGCGTTCGCC CGACGGGTCC GGCCGGGTGG ACGACTGGTC
GTCTGCGGAG ATCATCCCGG GGTGGTCGCC GTCCTCACCG AGCTGGGTCG CCAGCGGCCC
GGCAATGACG TCGCGGTGAA TGACGTCGCG GTGATCGACT ACGGCTTCGG TGCCGAACGC
CACTGGCGCG CCGTCGACGT CGTCACCACC GCGGGGGACG ACATGACCAG GGCGACCGTC
CTGCGGGCCG GTCAGGAGAT CGGCGCGCTG ACCCTGACGG TACCCGGCCG GCACTCGGTG
CTGAACGCGC TCGCGGTCCT CGCCACCGCC ACCGAGCTGG GAGTCGCTCC CGCCCAGACC
CTCACCACCC TGACGACCTT CACCGGCGCG GCCCGACGGT TCGAGTTCGT GGGCTTCTGG
AACGGCCCCG CCGACAGCAC CGGCGTCGGA CCCGCCGGAG GTCCGGGCAG CCTGGAGGTG
ATCGACGACT ACGCGCATCA TCCGACGGAG GTCCGTCTGA CGCTCGCCGC GGCCCGTTCA
CGGGCTCGGG GACGGCAGAT CTGGACGGTA CTCCAGCCAC ATACGTTCAG TCGGTTCGCC
GCGCTACTGG ACGACTTCGC GGCCGCGTTC AGCGACGCCG ACCGGGTGTA CGTCACCGAC
ATCTATGCCG CCCGCGAGAC CGACGACCTC GGTCTGCATG CCGTCGACCT GGTCAAGCGG
GTGAGCGAGC CGGCGGCAAC ATACTACGTG TCCTGGCCCG AACTCGTCGA ACGACTCGCC
ACGGACGTCC GCGTCACCCT GAGCGACGAG GCGTCGCGGG GGATCCTGCT GCTCACGCTC
GGAGCGGGAA CGATCACCAC GGTCGGTCCC CGGCTGCTGG CCGCCCTGGG CTTCTCGGCG
GCCGGTTGA
|
|---|
| Protein sequence | MTGQRTQHVH FLGIGGSGLS PLAQIHLAGG GTVSGSDSED SPRVATLRAR GVPIRIGATP
GPAAFAAELA GADVVVASSA LPDDHPEIVA ARALGLPVRR RSEWLPELTA GYRLVAVAGS
HGKSTTSAML TLVLRAAGLD PTAVIGAEVS QLGGNALAGS GDVFVLESDE YGGAFAGLDP
SIAVITNVEW EHPDVFPDEA SVRTAFAAFA RRVRPGGRLV VCGDHPGVVA VLTELGRQRP
GNDVAVNDVA VIDYGFGAER HWRAVDVVTT AGDDMTRATV LRAGQEIGAL TLTVPGRHSV
LNALAVLATA TELGVAPAQT LTTLTTFTGA ARRFEFVGFW NGPADSTGVG PAGGPGSLEV
IDDYAHHPTE VRLTLAAARS RARGRQIWTV LQPHTFSRFA ALLDDFAAAF SDADRVYVTD
IYAARETDDL GLHAVDLVKR VSEPAATYYV SWPELVERLA TDVRVTLSDE ASRGILLLTL
GAGTITTVGP RLLAALGFSA AG
|
|---|
| |