| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1387 |
|---|
| Symbol | |
|---|
| ID | 3903368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 1666755 |
|---|
| End bp | 1668266 |
|---|
| Gene Length | 1512 bp |
|---|
| Protein Length | 503 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637878724 |
|---|
| Product | amine oxidase |
|---|
| Protein accession | YP_480493 |
|---|
| Protein GI | 86740093 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | [TIGR02734] phytoene desaturase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.600466 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00651843 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGCGCACGG TGACCGGAGC GACGGATCAC GTCGTCATCG TCGGGGCCGG TCTCGCCGGT
CTGTCGGTCG CGCTGCGCCT GGTCGGAGCC GGCCGGCGGG TGACGGTGCT CGAGCGGGAT
GCGACCCCCG GCGGTCGGGC CGGCCTGCTC GCACTGGGCG ACTATCGTTT CGACACCGGA
CCGACCGTCC TGACCATGCC CGAGCTGATT GCCGACGCCC TGGACTGTGT CGGGGAGGAT
CTCGACCGCT GGCTGTCACT GACCCGGCTC GACCCGATGT ACCGGGGGTT CTTCGCCGAC
GGTTCGTCGC TGGACATCCG CGCCGACCCC GCCGACACCG CACAGGAGAT CCGGGCGCTG
TGCGGCCCGG CGGAGGCGGC CGGCTTCGAG CGGTTCGTCG GAATCGTCAC TGCAATGTTC
CGCACCCAGC TGCGCCACTT CATCGACGCG CAGGTCGACT CCCCGCTGTC GTTGCTGCGC
CCGCAGCTCG CCCGGCTGGC CGCCCTCGGC GGCTTCCGCC GGCTCGACAC CGTCGTCGGC
CGCCATCTAC GGGACCCGCG GACCCGGCGG ATGTTCTCCT TCCAGGCGAT GTACGCCGGG
CTCGCCCCGC ACGACGCACT GGCCCTCTAT GCCGTCATCT CCTACATGGA CTGCGTCGCC
GGGGTCTACC ACCCGGCCGG CGGCATGCAC GCCGTCGCCG AGGCGCTGGC CGGCGCCGCG
GCCAAACACG GTGCCACCCT GCGCTACGAG ACCACGGTGA CGCGGGTGGA GGTGCGGGGC
GGCCGGGCGG TCGCGGTGCA CACCGCGGCG GGGGAGCGCA TCGGCGCCGA CGTGGTGGTG
CTCAACCCCG ACCTGCCGAT CGCCTACACC GAACTGCTGC CTCCCTCGAC GGCGCCGGCC
CGCCTGCGCC GCCTGCGGTA CTCGCCCTCG TGCTTCCTCC TGCTGGCTGG GGCGCGCGTG
GAGTACCCGC ACACCGCGCA TCACACCATC CACTTCGGCC GGGCCTGGCG GTCGACCTTC
CGCGAGATCA TCGATCGCGG CGAGCTGATG AGCGACCCGT CCTTCCTCGT CACCACCCCC
TCACGCACCG AACCCGCGAT GGCCTCGGCC GGCGGCCACA CGTACTACGT GCTCTTCCCC
ACACCCAACC TCACCGCCCC GCTCGACTGG TCGGTGCTGC GCTCGCGCTA CCGCGACGAG
GTGGTCGCCA CCTGCGAACG CCACGGCTAC CGAGGCTTCG GCGACGCCAT CGAGGTGGAG
CAGGTCACCA CGCCCGCCGA CTGGCGGGCC CGCGGGATGG CGGCGGGCGC CCCGTTCGCG
GCGGCCCACA CCTTTCGCCA GACCGGTCCG TTCCGCCCCT CGAACCTGGC CCCGGGCCTC
GCGAACGTCG TGTTCGCCGG CAGCGGCACC CGGCCCGGCG TCGGGGTCCC GATGGTCCTC
ATTTCCGGCC GGCTGGCCGC GGAGCGGATC CTCGGCGCTG ACCGGGGTTA CCGTTCCCGC
GCCCTGTGCT GA
|
|---|
| Protein sequence | MRTVTGATDH VVIVGAGLAG LSVALRLVGA GRRVTVLERD ATPGGRAGLL ALGDYRFDTG
PTVLTMPELI ADALDCVGED LDRWLSLTRL DPMYRGFFAD GSSLDIRADP ADTAQEIRAL
CGPAEAAGFE RFVGIVTAMF RTQLRHFIDA QVDSPLSLLR PQLARLAALG GFRRLDTVVG
RHLRDPRTRR MFSFQAMYAG LAPHDALALY AVISYMDCVA GVYHPAGGMH AVAEALAGAA
AKHGATLRYE TTVTRVEVRG GRAVAVHTAA GERIGADVVV LNPDLPIAYT ELLPPSTAPA
RLRRLRYSPS CFLLLAGARV EYPHTAHHTI HFGRAWRSTF REIIDRGELM SDPSFLVTTP
SRTEPAMASA GGHTYYVLFP TPNLTAPLDW SVLRSRYRDE VVATCERHGY RGFGDAIEVE
QVTTPADWRA RGMAAGAPFA AAHTFRQTGP FRPSNLAPGL ANVVFAGSGT RPGVGVPMVL
ISGRLAAERI LGADRGYRSR ALC
|
|---|
| |