| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1374 |
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| Symbol | secF |
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| ID | 3906576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 1649002 |
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| End bp | 1650198 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637878711 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_480480 |
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| Protein GI | 86740080 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.574602 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.142388 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACTGG TCGGGCGGAT CTACCGCAGC GACTTCAACG TCGACTTCGT CGGCCGGCGC
AAGGCCTGGT ATGCCGTCTC CGGCGTCGTG GTCGCCGTCT GCATCATCAG CATGATCTTC
CGTGGCTTCA CCTTCGGTAT CGAGTTCTCC GGTGGCGCGG TCTTCCAGCT ACCCAGCGGT
GGCGGTACCG TCGCGCAGGT CGAGGACACG CTGTCCGGCA TCGGGCTCGA CCCGGCGGAC
AGTGTGGTCC AGCAACTGGA GACCTCCCAC CAGTTCCGGA TCCAGACGCC GACCCTCTCC
GACGCCCAGA CCCGTGAGCT GACCGGCGCG TTGGCCAAGC GCTTCTCGGT GTCGAACCCG
GACCGCGACA TCGCCGTGTC GACCGTCGGC TCGTCCTGGG GATCGACGAT CACGAACAAG
GCCCTCCAGG GCCTGGCCGT CTTCCTCGTG CTCGTCGTGA TCTACCTCTC GGTACGGTTC
GAGTGGAGGA TGGCGCTCGC GGCGATGGCC GCTCTTGTTC ACGACCTCGT CGTCACCATG
GGTGTCTACT CGCTGGTAGG TTTCGAGGTG ACGCCGTCGA CGGTCATCGC CGTGCTGACG
ATCCTCGGAT TCTCCCTGTA CGACACGGTG GTGGTGTTCG ACCGGGTGCG GGAGAACACC
GCGGGCATGG GCACGTCGAC GCGGCGGACC TACGCGGAGG CGACGAACGA CGCGCTCAAC
GAGACGTTGG TGCGTTCACT GAACACCTCC CTCATCGCCC TCATCCCGGT CGCATCCCTC
CTCTTCGTCG GCGCCGGTCT GCTCGGTGCC GGCACGCTGA AGGACCTCGC GCTCGCCCAG
TTCGTCGGTA TCGCCTCCGG TACATACTCC TCCCTGTTCT TTGCCACGCC GCTGCTCGTC
GACCTCAAGC GCGGCGATCC CGCCGTGCGG GCGCTGGATG CGCGGGTCGC CCGTGAGCGC
GCCAGGCGGG TCCGGGCCGC CGCGGGTGTG CCGGGCACGG CTGTTCCCGC CGGCGCGGCG
GTCGATCCGG CCGGCTGGGG TGAGGACGCT CCCGTCTCCG GCGCGCGTGA ACCGGTTCCG
GCCGGGGCGA ACCTGGGCGG TGCCGCCCGA CGACCGTCGG GCGCGCCCCC TGCCCGGCGC
GCCGCGGGGC GCAAACCCGG GCGGCGCGGA CGGCCGAGCG GTAAGAAACG CCGGTGA
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| Protein sequence | MALVGRIYRS DFNVDFVGRR KAWYAVSGVV VAVCIISMIF RGFTFGIEFS GGAVFQLPSG
GGTVAQVEDT LSGIGLDPAD SVVQQLETSH QFRIQTPTLS DAQTRELTGA LAKRFSVSNP
DRDIAVSTVG SSWGSTITNK ALQGLAVFLV LVVIYLSVRF EWRMALAAMA ALVHDLVVTM
GVYSLVGFEV TPSTVIAVLT ILGFSLYDTV VVFDRVRENT AGMGTSTRRT YAEATNDALN
ETLVRSLNTS LIALIPVASL LFVGAGLLGA GTLKDLALAQ FVGIASGTYS SLFFATPLLV
DLKRGDPAVR ALDARVARER ARRVRAAAGV PGTAVPAGAA VDPAGWGEDA PVSGAREPVP
AGANLGGAAR RPSGAPPARR AAGRKPGRRG RPSGKKRR
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