| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1373 |
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| Symbol | secD |
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| ID | 3906575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 1647177 |
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| End bp | 1649000 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637878710 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_480479 |
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| Protein GI | 86740079 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.082287 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCACGCG GCTCGGCACG GGTACCCAGG GGGATCTCCG TCTGGACCCG GCTGGGGATC
CTCGGCGGTC TGATCGTCGT CCTCTACGGC CTCATGGCCG CTACCGGAAA CTGGAAGCCC
CGGCTCGGGC TCGACCTGCA GGGCGGGACG AGCGTCATCC TCACGCCTCG TGCCACGCAG
GGAAACAACG TCGACAGTGG TGCCGTCAAC CAGGCCGTCG ACATCATCCG GCAGCGCGTT
GACGGCTTGG GCGTCGCCGA GTCCGAGGTT CATCGTACCG GCAACCAGAT CGAGATCTCG
GTGCCCGGCC GCGGCCGCAA CGACGTCGTG GATCTGGTCG GGCAGACCGC TGAACTGCGT
TTCCGTGAGG TCGCCACGTC CGGCCAGGCC ACCCCGGTGC CCACCCCCAC TGGGGCGGCC
TCCGCACCCA CGCCGGGTGC GACGGGCCAG CCGGCCCCGA CGGCCGGCCA GAGCACGCCG
AGCATCGCGC CGTCATCCCC GGCACCCGCC GCGTCGAACA AACCGGCCGC GCTCGGTGAC
GGCACGGGCC GCGGCCTGAT CGCCCAGCCG GTGTCGCTGA CCGCCGCGGG CACACCCGCG
GTGGGCGCGG CCTCGGCTTC TCCGGTGGCC TCGGCTTCTC CGGCCCCGGC CCCCGCGCCG
GCGGCGACCG GGTCGACCGG GTCGACCGGG GACAGCCCGC CTGCCGACGT GTTCGCTCGC
TACGAGTCGC TGACGTGCGC AGCGGCCGAC GTCCGCAAAG CCTCGGTCAG CACCGACCGC
CCGCAGGACT GGACCGCCGC CTGTGACCGG ACCGGGACGA CGAAGTACCT GCTCAAGCCG
GCCACGGTGG TCGGGACGGA TGTGAAGACC GCCTCCGCGG GCCTGCAGGG CGGCGGCGGG
ACCACGGGCA TCACCACCGG GCAGTGGGTC GTGAACGTCG AGTTCACCGG TCCGGGCCAG
AACAAGTTCA CCAAGCTGAC CGAGAGCACG ATCGGCAAGC AGGTTGCGAT CGTGCTCGAC
GGGGTGGTGC AGTCCGCGCC GCAGACCAAC GAGCGCATCC CCGGATCGGC CCAGATCTCC
GGCGGCTTCA GCCAGTCCGA CGCCGAGGAC CTCGCCAACG TGCTGCGCTA CGGTGCCCTT
CCCCTGGCCT TCGAGCGCTC CCAGGCCGAG TCCATCTCGC CGACCCTCGG TCGTGACTCG
CTGCACGGCG GACTGCTCGC CGGCGCCATC GGACTCGTTC TCGTCATCGC CTACTCCTTC
CTGTACTACC GGGCGCTGGG CATGGTCGTG ATCATCTCCC TCGCCGTCAG CGGTCTGCTG
ATCTACGCCT CGGTGGTGCT GCTCGGCGTG GCGATCGGGT TCACGCTGAC CCTGGCCGGC
ATCGCCGGCC TGATCGTGTC GATCGGTGTC ACGGCGGACT CGTTCGTGGT CTACTTCGAA
CGGATCAAAG ACGAGGTCCG GGCCGGTCGC ACGGTCCGGG CGGCCACGGA TCGTGCCTGG
CCCGCCGCGC GGCGCACGAT GCTCTCCGCG GACACGGTTT CCTTCCTGGC CGCCGCGGTC
CTCTACATCC TGTCGATCGG CTCGGTGCGC GGCTTCGCCT TTACGCTCGG GCTGTCGACG
TTGAGCGATG TCGTGATCAT GTTTATCTTC ACCCGGCCGT TGGTGACGTT GCTGGTGCGG
CGCAGACTGT TCTCGGTCAG CCGGTACTCG GGCCTGAGTC CGAAGACCCT CGGCGGGCGT
GGCGGTGGCG TGGCGCCGGC CGCTTCCACC CGGGCGCGAC TGGCCAAGCG GCCGGCGCCG
GCCGGGCAGA GGCGGGAGAG CTGA
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| Protein sequence | MARGSARVPR GISVWTRLGI LGGLIVVLYG LMAATGNWKP RLGLDLQGGT SVILTPRATQ
GNNVDSGAVN QAVDIIRQRV DGLGVAESEV HRTGNQIEIS VPGRGRNDVV DLVGQTAELR
FREVATSGQA TPVPTPTGAA SAPTPGATGQ PAPTAGQSTP SIAPSSPAPA ASNKPAALGD
GTGRGLIAQP VSLTAAGTPA VGAASASPVA SASPAPAPAP AATGSTGSTG DSPPADVFAR
YESLTCAAAD VRKASVSTDR PQDWTAACDR TGTTKYLLKP ATVVGTDVKT ASAGLQGGGG
TTGITTGQWV VNVEFTGPGQ NKFTKLTEST IGKQVAIVLD GVVQSAPQTN ERIPGSAQIS
GGFSQSDAED LANVLRYGAL PLAFERSQAE SISPTLGRDS LHGGLLAGAI GLVLVIAYSF
LYYRALGMVV IISLAVSGLL IYASVVLLGV AIGFTLTLAG IAGLIVSIGV TADSFVVYFE
RIKDEVRAGR TVRAATDRAW PAARRTMLSA DTVSFLAAAV LYILSIGSVR GFAFTLGLST
LSDVVIMFIF TRPLVTLLVR RRLFSVSRYS GLSPKTLGGR GGGVAPAAST RARLAKRPAP
AGQRRES
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