| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1326 |
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| Symbol | |
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| ID | 3906598 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 1589995 |
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| End bp | 1591962 |
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| Gene Length | 1968 bp |
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| Protein Length | 655 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637878659 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_480432 |
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| Protein GI | 86740032 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0578519 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.326847 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCGCTTC TGTCCACGAT CAGTAGTCCG CAGGACGTCA AGCGCCTCGA CCACGAGGAG
CTCGCCACCC TGGCGGCCGA GATCCGTGAT TTCCTCATTC ACGCAGTCGC GCGTACGGGA
GGTCACCTCG GGCCGAATCT GGGGGCTGTC GAGCTGACGT TGGCAATACA TCGTGTGTTT
GATTCGCCAT TCGACCGCAT CCTTTGGGAC ACCGGCCATC AGTCCTATGT GCACAAGATT
CTGACCGGCC GGGCGGACGA TTTCTCCGGG CTGCGCCAGC GGGGTGGCCT TTCCGGCTAC
CCCAGCCGGG CCGAGTCCGA GCACGACATC ATCGAGAATT CGCACGCCTC GACCGCCCTG
TCCTACGCCG ACGGGCTGTC GCGTGCCTAC GCGCTGCGTG GTGAGGACCG GGCCGTCGTC
GCCGTCGTCG GTGACGGCGC CCTGACCGGC GGGATGTGCT GGGAGGCGCT GAACAACATC
GCCGCCGACG ACCGGCCCGT CGTCATCGTC GTCAACGACA ACGGCCGCTC CTACGCACCG
ACGATCGGCG GCCTCGCCGA CCACCTCGCC GCGCTGCGGC TGGCGCCCGA GTACGAGCAG
GTCCTCGACG TCGTCAAGCA GGTCCTCGGC CGCACCCCGC TGGTCGGCCC CCCGCTGTTC
GACGCGCTGC ACGGCATCAA GAAGGGCATC AAAGACGTCG TCCAGCCGCA GGGCATGTTC
GAGGACCTCG GCCTGAAGTA CGTCGGCCCG GTCGACGGCC ACGACGTCGT CGCGGTCGAG
TCGGCCCTGC GCCGGGCTCG GGATTTCGGC GGGCCCGTCA TCGTCCACTG CGTGACCCGC
AAGGGCTTCG GCTACCCGCC GGCGGAGCAG GACGACGCCG ACAACTTCCA CGGCGTCGGC
ATCATCGACC CGGCGACCGG CAAGCCGGTG TCGACGTCGA AGACCATCAG CTGGACGAGC
ATCTTCTCGG ACGAGATCGT GCAGATCGGT TCCGAGCGGC CCGACGTCGT CACGCTGACC
GCCGCGATGC TCCAGCCGGT TGGTCTCGGC GCCTTCGCCA AGGCCTACCC GGACCGGGTG
TTCGACGTCG GTATCGCCGA GCAGCACGCC GTCACCTCGG CCGCCGGGCT CGCGATGGGT
GGGCTCAAGC CCGTCGTGTG TCTCTACGCC ACGTTCCTCA ACCGCGCGTT CGACCAGGTC
CTGATGGACG TCGCCCTGCA CCGCCAGCCC GTGACGTTCG TGCTCGATCG GGCCGGCATC
ACCGGGGAGG ACGGGGCGTC GCACAACGGC ATGTGGGACC TGTCGTTCCT GCAGGTCGTC
CCGGGGCTCG CGATCGCCGC CCCGCGGGAC GCGCCGACCC TGCGGGCGGA GCTGCGTGAG
GCCGTGGGTG ACACCGACGG CCCGACCGTC GTGCGTTTCC CCAAGGGCAA GGTCGCCGTG
GACGTGCCGG CGATTGACAC GGTCGGCGGG GTGGACGTGC TCTACCGTTC GCCGAAGGTG
GCCCAGCGCC GCGAGGTGCT GCTGGTCTCC ATCGGCGCGA TGGCCGCCAC CTGCCTGGAG
GTCGCGGAGC GGGTCGCGAG CCAGGGCATC GGCATCACCG TTGTCGACCC GCGGTGGGTC
AAGCCACTGG ACCCGGCGCT GATCGATCTT GCCCGCGCCC ACGACCTCGT CGTCACCGTC
GAGGATAACG GCCGGGTCGG CGGGGTCGGG GCGGCGCTGG CCCAGCTGCT GCGCGACGCC
GACGTTGACG TGCCCCTGCG GGACTTCGGC ATCGCCCAGC GCTTCCTCGA CCACGGCAAG
CGGGACGAGG TCATGGCCGA GGTCGGGCTT GCCCCGCAGG ACCTCGCCCG CAAGGTCGTC
GAGGCCGTCG CGAAGCGCCA GCCGGCGATC GAGGACGACC CGACCTCGCC CGGCGAAGCG
GCCCCGGCGG GCGAGCGGGC CGGCGAGGCC ATCGGCGACC AGCGCTGA
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| Protein sequence | MSLLSTISSP QDVKRLDHEE LATLAAEIRD FLIHAVARTG GHLGPNLGAV ELTLAIHRVF
DSPFDRILWD TGHQSYVHKI LTGRADDFSG LRQRGGLSGY PSRAESEHDI IENSHASTAL
SYADGLSRAY ALRGEDRAVV AVVGDGALTG GMCWEALNNI AADDRPVVIV VNDNGRSYAP
TIGGLADHLA ALRLAPEYEQ VLDVVKQVLG RTPLVGPPLF DALHGIKKGI KDVVQPQGMF
EDLGLKYVGP VDGHDVVAVE SALRRARDFG GPVIVHCVTR KGFGYPPAEQ DDADNFHGVG
IIDPATGKPV STSKTISWTS IFSDEIVQIG SERPDVVTLT AAMLQPVGLG AFAKAYPDRV
FDVGIAEQHA VTSAAGLAMG GLKPVVCLYA TFLNRAFDQV LMDVALHRQP VTFVLDRAGI
TGEDGASHNG MWDLSFLQVV PGLAIAAPRD APTLRAELRE AVGDTDGPTV VRFPKGKVAV
DVPAIDTVGG VDVLYRSPKV AQRREVLLVS IGAMAATCLE VAERVASQGI GITVVDPRWV
KPLDPALIDL ARAHDLVVTV EDNGRVGGVG AALAQLLRDA DVDVPLRDFG IAQRFLDHGK
RDEVMAEVGL APQDLARKVV EAVAKRQPAI EDDPTSPGEA APAGERAGEA IGDQR
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