| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1288 |
|---|
| Symbol | |
|---|
| ID | 3905093 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 1539416 |
|---|
| End bp | 1541230 |
|---|
| Gene Length | 1815 bp |
|---|
| Protein Length | 604 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637878621 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_480394 |
|---|
| Protein GI | 86739994 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCCAGT CAGTTTTGTT CCGGTCGGTG TTGCCCCGGT CGATGCTGGT CCGGCCGGTC
TCGGGGGTCG CCGCCCTGAT GGGGGGTGCG CTGGGTCTGC TTCTGGGACT GCTCTGTCTC
ATCGGCGGAT GGGGCGGGCC CGCGCCGTCG CCGGTCGCGT TGTCGTGCGT GGTGCTCGCG
GCCGCGGCGT TGTCGATCGC GGTGGCGATC CTCGCCGCGG CGGTCTGGCC GGGTCCGAAC
GGTCCGGCCG ACGCGAACGG TCTGGCCGGT TCGGCCGGAC CGGACATCCA GCCGTGGGAT
CCCCGGGGAG GCGTGGGCCG TGCGTGGCCG CGGCGCGGCG TGGTGGATGA GCTGACCGGG
CTGCCGGGCC GACGGTACTT CCTCGACGTC GCCAGCCGTT GTCTCACGGG TGGTGAGCAC
CGGGCGCGTG GCGCGACGTC CGTGTCGGTG CTGCTCATCG ATCTCGATCG GATGCGTGAT
GTCAACGGGG CGCTCGGGCA TGAGCATGGG GACCGCCTGC TTGCCACGGT GGGTTGCCGG
CTACGCGGAG CGCTGCCCGG ATCGGATCTG CTCGCCCGGG TGGACGGCAA CGCGTTCGCC
GTGCTGTTGC GCGGCGCCGA TGTGGCCCGG GCCGAACAGG TCGCTCGGCG GTTGCGGGAG
GTGCTGGAAC TGCCCGTTCC ACTCGCGGGA ACTCCGGTGC GGCCCGAGGC GAGCGTGGGG
ATCGCCCATG CCCCCGAGCA CGGCCGTGGC GCGCTGGAGC TCTTTCGTCA CGCGGAGGAG
GCGATGTACC TGGCGAAGGG GGGCCGTCAC GGGCAGACCG TCTACGCCCG CGACCATCCA
CCGATCAACC GTGCCCGCCT GCTGCTGCGG GCCGAGGTGC GCCATGCGCT GGACTCCGGC
CAGATCGAAC TGAGTTACCA GCCCAAGGCG GATCTGCGCA GCGGTCGGAT CAGCGGTGTG
GAGGCCCTCG TCCGCTGGCG CCATCCGGTC GACGGCGTGC GGCAGCCCGA CGCCTTCCTG
GCGGAGATCG AACGTGCCGG GTTGATGCCG AAGCTCACCG TGCAGGTCCT CGACCAGGCC
TTGGCCGACT GCGCGCGCTG GCACGGCCGG GGTGCCCCGC TCGCGGTGTC GGTGAACGTC
CCCGCGTCGG TCATCGTCGA CCGCGCCTTC GTCGGCGTGG TGCGGGCCGC GCTCGCCCGG
CACCGGCTCC CGCCCTCGGC GCTTGTCATC GAGGTCACCG AGGACTCCCT CATCGTGGCG
CGGGAGCTGG CGCAGGGAAC CCTGGCGGGG CTGCGCCGGT TCGGTGTGCG GGTCAGCCTG
GACGACTACG GCACCGGCTT CTGTTCGCTG TCGTACCTGC GCGAACTGCC GGCCGACGAG
GTGAAGCTGG ACCGGACCTT CCTGCGTGAC CTCGACCGCG ATCCGGCCGC GGCCGAGATC
GTGCGGTCCA CGGTCTCCCT GGCACATGCG CTGCGGTTAC GGATTGTCGC CGAGGGGGTC
GAAACGCAGC GTTCCTGGAC CTCTCTCGCC GCCTGGCAGT GTGACGAGGT CCAGGGGTAC
TTTGTGTCAC GTCCGATGGC GGGGGAACGA GTCGTCGGCT GGTTGCGGGA ATGGGGCAGC
AGGCTTGCCG TCCATCCCGG GACCGCGCCG CGCGCCGTGG CGGGACCGGT CGACACCTGC
GCGGCACAGT CCCCGATCTC CCCAATCGTG GCACCGGCGG TCGAGGCCGT CGCGCCCACG
CGGCCGTCAG CGGCGGGACC GGCAACCCGG CGGGCGGTCG GGCGCCGGGT GCCGGCCGAC
CTTGCGGCGT CCTGA
|
|---|
| Protein sequence | MVQSVLFRSV LPRSMLVRPV SGVAALMGGA LGLLLGLLCL IGGWGGPAPS PVALSCVVLA
AAALSIAVAI LAAAVWPGPN GPADANGLAG SAGPDIQPWD PRGGVGRAWP RRGVVDELTG
LPGRRYFLDV ASRCLTGGEH RARGATSVSV LLIDLDRMRD VNGALGHEHG DRLLATVGCR
LRGALPGSDL LARVDGNAFA VLLRGADVAR AEQVARRLRE VLELPVPLAG TPVRPEASVG
IAHAPEHGRG ALELFRHAEE AMYLAKGGRH GQTVYARDHP PINRARLLLR AEVRHALDSG
QIELSYQPKA DLRSGRISGV EALVRWRHPV DGVRQPDAFL AEIERAGLMP KLTVQVLDQA
LADCARWHGR GAPLAVSVNV PASVIVDRAF VGVVRAALAR HRLPPSALVI EVTEDSLIVA
RELAQGTLAG LRRFGVRVSL DDYGTGFCSL SYLRELPADE VKLDRTFLRD LDRDPAAAEI
VRSTVSLAHA LRLRIVAEGV ETQRSWTSLA AWQCDEVQGY FVSRPMAGER VVGWLREWGS
RLAVHPGTAP RAVAGPVDTC AAQSPISPIV APAVEAVAPT RPSAAGPATR RAVGRRVPAD
LAAS
|
|---|
| |