Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_1283 |
Symbol | |
ID | 3905088 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 1534060 |
End bp | 1535289 |
Gene Length | 1230 bp |
Protein Length | 409 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637878617 |
Product | sigma 38 |
Protein accession | YP_480390 |
Protein GI | 86739990 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCGCGTA ACCTGGGTCG ATCCCGAGAA GGAAGTGACG AGATTCCGCC CATGAGTCCT ACCGTCCTAC CCCGCGAAGC CCAGGTGGAC GAGGTCAAGG ACCTCATCAC CCGGGGCAAG GAGATCGGGT TCCTCACCAC CGAGGATGTC ACGGTCGCCA TCCAGGCCGC GGAGCTGCCC CCGGAGCAGG CCGAGACGGT GCTGCAGGTG CTGAACGACG AGGGCATCGA GGTACTCGAG GCGGGAGGTG AGAGCCCCGA CGAGGCGGAT CTGCTGGCCC GCCGTCGCCG CGAGGAGGAG GAGCTCGCCC TCAAGGCGCC GACCTCCGAC CCGGTGCGCA TGTACCTCAA GGAGATCGGC AAGGTCCCCC TGCTCACCGC CGAGGAGGAG GTTGATCTTG CCAAGCGGAT CGAGGCGGGG CTGTTCGCCT CCGAGAAGCT GGCGGTGGCC ACCAAGAAAA CTTCCCCGCA GATGCGGCGG GACCTCGAGG CCATCGAACG CGACGGGCAG ATCGCCAAGC GCAAGCTGGT CGAGGCGAAC CTGCGTCTCG TCGTCTCGAT CGCCAAGCGG TACGTCGGGC GCGGCATGCT GTTCCTGGAC CTCATCCAGG AGGGCAACCT CGGCCTGATC CGGGCGGTCG AGAAGTTCGA CTACACCAAG GGCTACAAGT TCTCGACCTA CGCCACCTGG TGGATCCGGC AGGCGATCAC GCGGGCCATC GCCGACCAGG CACGCACCAT CCGCATCCCG GTGCACATGG TCGAGACCAT CAACAAGCTG ATCCGCATCC AGCGGCAGCT CCTGCAGGAC CTCGGCCGGG AGCCGAGTCC GGAGGAGATC GCCAAGGAGA TGGATCTCAC CCCGGACAAG GTGCGTGAGA TCCTCAAGGT CTCACAGGAG CCGGTGTCGC TGGAGACCCC CATCGGTGAG GAGGAGGACT CCCACCTTGG CGACTTCATC GAGGACTGCG ACGCCGTCGT CCCGGTCGAC GCGGCCAGCT TCATCCTGCT TCAGGAGCAG CTCGACTCGG TCCTGCACAC CCTGTCCGAC CGGGAGAAGA AGGTCATCCA GCTGCGCTTC GGGCTCACTG ACGGGCACCC GCGTACGTTG GAGGAGGTCG GGCGCGAGTT CGGGGTCACC CGGGAGCGCA TCCGCCAGAT CGAGTCGAAG ACGCTGTCCA AGCTTCGGCA TCCCTCCCGG TCGCAGAAGC TGCGCGACTA CCTGGAGTAG
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Protein sequence | MPRNLGRSRE GSDEIPPMSP TVLPREAQVD EVKDLITRGK EIGFLTTEDV TVAIQAAELP PEQAETVLQV LNDEGIEVLE AGGESPDEAD LLARRRREEE ELALKAPTSD PVRMYLKEIG KVPLLTAEEE VDLAKRIEAG LFASEKLAVA TKKTSPQMRR DLEAIERDGQ IAKRKLVEAN LRLVVSIAKR YVGRGMLFLD LIQEGNLGLI RAVEKFDYTK GYKFSTYATW WIRQAITRAI ADQARTIRIP VHMVETINKL IRIQRQLLQD LGREPSPEEI AKEMDLTPDK VREILKVSQE PVSLETPIGE EEDSHLGDFI EDCDAVVPVD AASFILLQEQ LDSVLHTLSD REKKVIQLRF GLTDGHPRTL EEVGREFGVT RERIRQIESK TLSKLRHPSR SQKLRDYLE
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