| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1148 |
|---|
| Symbol | |
|---|
| ID | 3903576 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 1364471 |
|---|
| End bp | 1366153 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637878480 |
|---|
| Product | putative ABC transporter ATP-binding protein |
|---|
| Protein accession | YP_480256 |
|---|
| Protein GI | 86739856 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.493052 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAGT ACGTCTTCCA GATGCGCAAA GCGCGCAAGG CCCATGGCGA CAAGGTCATC
CTCGATGATG TGACCCTGTC GTTCCTCCCC GGAGCCAAGA TCGGGGTAGT CGGCCCGAAC
GGCGCGGGGA AGTCGTCCCT GCTCAAGATC ATGGCCGGCC TCGATCAGCC GAGTAACGGC
GAGGCGACCC TGAGCCCCGG CTACACGGTC GGCATGCTCG CCCAGGAACC CCCGCTGGAC
GAGACCAAGG ACGTCCGCGG CAACGTCGAG GACGGCGTGC GCGAGATCCG CCGGGTGCTC
GCCCGCTACG AGGAGATCAA CGAGAAGATG TCCGCGCCCG ACGCGGACTT CGACTCCCTC
CTCGCCGAGC AGGCCGAGCT TATCGACAAG ATCGAGGCCG CGAACGCCTG GGAGCTCGAC
AGCCAGCTCG ACCAGGCCAT GGACGCGCTG CGGCTGCCGC CCGGCGATGC CGACGTCACC
CTGCTCTCCG GCGGTGAGCG CCGCCGGGTC GCGCTGTGCA AGCTCCTGCT TGAGGCTCCC
GACCTACTCC TGCTCGACGA GCCGACCAAC CACCTCGACG CCGAGAGCGT CGCCTGGCTG
GAGCAGCACC TCGCCCGCTA TGCGGGCGCC GTGCTGGCCG TCACCCACGA CCGGTACTTC
CTGGACAACG TCGCCGGCTG GATCCTCGAG CTCGACCGGG GCCGTGCCTT GCCCTACGAG
GGCAACTACA CCACCTACCT GGAGAACAAG GCGGCCCGGC TGAAGGTCGA AGGCCAGAAG
GACGCCAAGC GGCGCCGGGT GCTCGCCCAG GAACTCGAGT GGGTCCGGTC CAACCCGAAG
GCCCGCCAGA CCAAGAGCAA GTCGCGTCTC GCCCGCTACG AGGAGCTGGC CGCCGAGGCG
GACCGGGCGC GCCCGCGCGA CTTCGAGGAC ATCCAGATCC CGCCCGGCCC CCGGCTCGGC
AACCAGGTCA TCGAGGCCAA GGGGCTCACC AAGGGCTTCG ATGACCGGCT TCTCATCGAC
AACCTGTCGT TCACCCTGCC GCGCGGCGGC ATCATCGGCG TGATCGGCCC CAACGGCATC
GGTAAGACGA CCCTGTTCAA GATGTTGACC GGCCAGGAGG CGCCGGACGC CGGAGAGCTC
GTCATCGGCG ACACCGTCGA CATCGCCTAT GTCGACCAGA CCCGCTCGGG CCTGGACCCG
AAGAAGAACG TCTGGCAGGT CGTCTCCGAC GGCCTCGACC ACATCGTCGT CGGCAAGGTC
GACTTCCCGA GCCGGGCGTA CGTGTCGTCA TTCGGGTTCA AGGGGCCGGA CCAGCAGAAG
CCCGTCGGTG TGCTGTCCGG TGGGGAGCGT AACCGGCTGA ACCTCGCGCT CACCCTCAAG
CGTGGCGGCA ACGTCCTGCT TCTCGACGAG CCCACCAACG ACCTCGACGT GGAGACGCTG
CGCTCCCTGG AGGACGCGCT GCTGGAGTTC GCCGGCTGCG CCGTGGTCAT CTCCCACGAC
CGCTGGTTCC TCGACCGGGT CGCCACCCAC ATCCTGGCCT GGGAAGGAAC CGACGAGGAC
CCGGCGCGCT GGTTCTGGTT CGAGGGGAAC TTCGCCGACT ACGAGACCAA CAAGATCGAC
CGTCTCGGGC AGGAGGCGGC CCGCCCGCAC CGCGTCACCC ACCGCAAGCT CACCCGGGAC
TGA
|
|---|
| Protein sequence | MAQYVFQMRK ARKAHGDKVI LDDVTLSFLP GAKIGVVGPN GAGKSSLLKI MAGLDQPSNG
EATLSPGYTV GMLAQEPPLD ETKDVRGNVE DGVREIRRVL ARYEEINEKM SAPDADFDSL
LAEQAELIDK IEAANAWELD SQLDQAMDAL RLPPGDADVT LLSGGERRRV ALCKLLLEAP
DLLLLDEPTN HLDAESVAWL EQHLARYAGA VLAVTHDRYF LDNVAGWILE LDRGRALPYE
GNYTTYLENK AARLKVEGQK DAKRRRVLAQ ELEWVRSNPK ARQTKSKSRL ARYEELAAEA
DRARPRDFED IQIPPGPRLG NQVIEAKGLT KGFDDRLLID NLSFTLPRGG IIGVIGPNGI
GKTTLFKMLT GQEAPDAGEL VIGDTVDIAY VDQTRSGLDP KKNVWQVVSD GLDHIVVGKV
DFPSRAYVSS FGFKGPDQQK PVGVLSGGER NRLNLALTLK RGGNVLLLDE PTNDLDVETL
RSLEDALLEF AGCAVVISHD RWFLDRVATH ILAWEGTDED PARWFWFEGN FADYETNKID
RLGQEAARPH RVTHRKLTRD
|
|---|
| |