| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0876 |
|---|
| Symbol | |
|---|
| ID | 3903859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 1018824 |
|---|
| End bp | 1021628 |
|---|
| Gene Length | 2805 bp |
|---|
| Protein Length | 934 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637878209 |
|---|
| Product | putative ATP/GTP binding protein |
|---|
| Protein accession | YP_479989 |
|---|
| Protein GI | 86739589 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.486625 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTACTG TGGCAGGCTG TGCGGCTATG GGCACGAGGG TCCCGGCGTC AGGCGGCGGC
GCGGTGCAGG GTGCGGCAAG GTCGCCATCG TCGGGGGTGG ATTTCTTCGT CTCCTACACC
GGGGCCGATC AGGGATGGGC GGAGTGGATC GCCTGGGTGT TGGAGGACGC CGGCTACCGG
GTGCGGATCC AGACCTGGGA CTTCAACGCG GGTAGTCATT TCGTCACCGA GATGCATCAG
GCGGCACAGG TCGCGGCCCG CACGATCGCG GTGCTGTCGA CGGCGTACCT GTCCTCGGCG
TTCGCGGAGG CGGAGTGGCA GGCCGCCTGG GCCGCCGACC CGTCCGGGCG GGCGCGCAAG
CTGCTGGTGT TCCGAGTGGA GGAATGTGAT CGGCCCGGGC TGCTGGGTCA GCTGGTCAGC
GTGGACCTGT TCGGCCTCGA CCGGGACATC GCGGCCGGGC GGCTGGTGGC CGCGGCACGT
GGGGAGCGGA GTAAGCCGGC GGTGGAGCCG GTCTTTCCCG GCGGGCCCGC CCAACCGATG
GTCACCGCGA CGGGGATGGA GCCGACGTTC CCCGGGCGGC TGCCCGATGT GTGGAACGTG
CCGAGTCGCA ACCGGCATTT CACCGGCCGC CAGTCCCAGC TCGACCAGAT CCGCACCGAG
CTGGGGTCGG GGCCGGTGGC GGTGACCACC CTGCACGGCA TGGGCGGGGT GGGCAAGACC
CAGTTGGCCG TCGAGTACGC CCATCGGCAC GCCGCCGAGT ACACATTGGT CTGGTGGATC
GACGCGGAAC AGACCCTCCT GGTCGGCGAG AAGTTCGCCG CGCTCGCGGG CCCGCTGGGT
CTGTCGACCG ATGGAGCGGT ATCCGACATC GCGGCCATCG TGCTCGCAGC CCTAGGCCGT
CGGGTGGGGT GGCTGGTGGT GTTCGACAAC GCCGAGGATC CCGTCGCCTT GCGGGACTGG
CTGCCAAGCG GACCGGGCCA TGTGCTGATC ACGTCCCGGA ATCCGGGCTG GGAGGCACTC
GCCGCTGCGG TCGACGTGGA CGTGTTTGAA CGGGCTGAGG CGGTGGCGTT CCTGACCCGC
CGTCTTCCCG GCCTGAACGC GGCGGTAGCC GACGCGCTGG CTGCCGAGTT GGGTGACCTG
CCTCTGGCGT TGGCGCAGGC CGCCGGCTAC CTCACCACGA CCCGGACGGA TCCGGCCAGT
TACCTTGCGA AGTTCCGTAC CCGGCGTACG ACGCTGCTGG GCAAAGGGGG CGATCCCCTC
TATGCCGGCA CCATCGCCAC CGCTTGGTCC ATGGCTCTGG AACGGCTGCG GGCCGACGCC
CCGGCCACCG TGCAGCTGCT GACGCTGTGC GCGCTGCTGG CTCCCGAACC GATCCCGTTG
GCCCTGTTCG ATGACCATCC CGATCTTCTC GACGGCCCGT TGGCGCAGGC GTGCGCCGGT
ACCCATCCCC GGCTCGACCT CGACGATGTG GTCGGTGACG CGCTGGCCTA CTCCCTGGCC
CGCCGGAGCG GGAACACGAT TCAGCTGCAC CGCCTCGTCG GGGCAGTCAT CGCCGGTCAG
CTGCCCGAGG AACGTCGCGA CGTCCTGCGC GGCGTGGTGG TGGCCCTGGT GGAGGCCGCA
CTGCCGGATG AACCCCACCG GTCCGGGACG TGGCCTGTCT ACGCCATGCT GGTCCCCCAC
GCACGTATCG TGTTCCGTCC GGACCGTCCC GGCGTCCTGA AACTGCTCGA GTATCTCGAC
GCCAGTGGTG ACTACCGGAC GGCGAAGATC GTGCAGGAGG ACGTCCACAA CGACACCGTG
GCACGGCTGG GCGCCGAGCA TCCCGCGGCT CTGCGTACGC GTGCCGCCGT CGCCAACTGG
ACCGGGGAGG CGGGGGATCC GGGAGGCGCG CGCGACATGC TCGCGGCGTT GCTGCCCGTC
TGCGACCGAG CCCTGGGCGC CGACGACCGG CAGACCCTGC TGGTCGCGGC CCGTCTCGCG
GACTGGACCG GGCAGGCCGG CGACTGGCCC GGCGCGCGCG ACCTGTGCCT GTCCATCCTG
CCCCGGTGGC GACGCGTCGC GGGTGAGGAT GATCCGGAGA CCCTGTATGT CTGGGCGAAT
CTCGGGTTCT GGACCGGGCA GGCCGGCGAC GTGGCGGGCG CGTGCGCTCA CTACGCCGCG
TTTCTGCCGA TCAGGGAACG GGTGCTGGGA CCGGAACACC CGGATGTTCT CGAATCCCGT
GACCAGTACG CCCGTTGGAT CGGGGAGGCC GGGGATCCCG CGGCCGCGCG CGACCTGTGC
TCGGCGCTGC TCACCGTCCA TGAGCGGGTG TCCGGCGCGG AGCATCACGG CACGCTGTGG
GTCCGCACCA ACCTCGCCTG GTGGACCGGC AAGGCGGGTG ACCCGGCCGC CGCCCGCGAC
CAGTACGCAC AGTTACTGCC GATCCGTGAG CGGGTCTCGG GTCCCGAGCA TCCCGCGACC
TTGGTCGCCC GGGGTAACTT CGCCTACTGG GTGGGTCAGG CGGGAGACCC CGCGATGGCC
CGTGACCAGT ACGCCGCCCT GCTCCTGATC CACCGGCGGG TCCTCGGCCC CGACCATCCG
GACACGTTGC TCGACCAGCG CAACCTCGCC CACTGGACCG GGGAGGCGGG GGATCCCGCG
GGTGCCCGAG ACCAGTTTGC CGCGGTACTG GCGCTGTTCG AACGGGCGTT GGGACCCGAG
CACCGCGAGA CCGTGGCCGC CCGCACCGAG CTCGCCGTCT GGACGGCCGC CGCACCCGAC
TGGGCTGCCG CGCCACCCGG ATCCGCGACC GCCGGAAGGC CGTAG
|
|---|
| Protein sequence | MATVAGCAAM GTRVPASGGG AVQGAARSPS SGVDFFVSYT GADQGWAEWI AWVLEDAGYR
VRIQTWDFNA GSHFVTEMHQ AAQVAARTIA VLSTAYLSSA FAEAEWQAAW AADPSGRARK
LLVFRVEECD RPGLLGQLVS VDLFGLDRDI AAGRLVAAAR GERSKPAVEP VFPGGPAQPM
VTATGMEPTF PGRLPDVWNV PSRNRHFTGR QSQLDQIRTE LGSGPVAVTT LHGMGGVGKT
QLAVEYAHRH AAEYTLVWWI DAEQTLLVGE KFAALAGPLG LSTDGAVSDI AAIVLAALGR
RVGWLVVFDN AEDPVALRDW LPSGPGHVLI TSRNPGWEAL AAAVDVDVFE RAEAVAFLTR
RLPGLNAAVA DALAAELGDL PLALAQAAGY LTTTRTDPAS YLAKFRTRRT TLLGKGGDPL
YAGTIATAWS MALERLRADA PATVQLLTLC ALLAPEPIPL ALFDDHPDLL DGPLAQACAG
THPRLDLDDV VGDALAYSLA RRSGNTIQLH RLVGAVIAGQ LPEERRDVLR GVVVALVEAA
LPDEPHRSGT WPVYAMLVPH ARIVFRPDRP GVLKLLEYLD ASGDYRTAKI VQEDVHNDTV
ARLGAEHPAA LRTRAAVANW TGEAGDPGGA RDMLAALLPV CDRALGADDR QTLLVAARLA
DWTGQAGDWP GARDLCLSIL PRWRRVAGED DPETLYVWAN LGFWTGQAGD VAGACAHYAA
FLPIRERVLG PEHPDVLESR DQYARWIGEA GDPAAARDLC SALLTVHERV SGAEHHGTLW
VRTNLAWWTG KAGDPAAARD QYAQLLPIRE RVSGPEHPAT LVARGNFAYW VGQAGDPAMA
RDQYAALLLI HRRVLGPDHP DTLLDQRNLA HWTGEAGDPA GARDQFAAVL ALFERALGPE
HRETVAARTE LAVWTAAAPD WAAAPPGSAT AGRP
|
|---|
| |