Gene Francci3_0838 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_0838 
Symbol 
ID3905115 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp978266 
End bp980611 
Gene Length2346 bp 
Protein Length781 aa 
Translation table11 
GC content73% 
IMG OID637878171 
Productxanthine dehydrogenase, molybdenum binding subunit apoprotein 
Protein accessionYP_479951 
Protein GI86739551 
COG category[C] Energy production and conversion 
COG ID[COG1529] Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs 
TIGRFAM ID[TIGR03196] xanthine dehydrogenase D subunit 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCTGG GGATCGGTCG TCCGGTGCGT CGTCCGGATG GGCCGGACAA GGTGACCGGT 
AGCTTCTCCT ACGTTGGTGA TCTGCGTGTT CCGGGGATGG TGCACGCCCG CACCCTGCGA
TCGCCCCATG CCCGGGCGCG GATCCGGCGC GTCGACGTCG ACGCCGCGCG CCGGCTGCCC
GGCGTTGTGG GGATGGTGAC CGCCGCCGAC GTCCCCGGCA TGGCCACCTA CGGGCTGATC
GTCGCCGACC AGCCGGTGTT CGCCGCGACC GAGATTCGGT ACGCAGGGGA GCCGGTCGCC
GCCGTGGCCG CGGTTGACGT CCGGACCGCG CGCCGGGCGC TCGCCGCGAT CGAGGTGGAC
TACGAGCCGC TGGCACCTTC GACCGACCCC GACCGGGTAT GGCAGCCGGA TGCCGAGCCG
CTGCATCCGG CGGGCAACCT GTACCGCGAG ATCGAGCTGC GCCACGGGGA TCCCGACGCG
CTCGGCCCGG TGGTGGTCGA GGACCAGTAC CTCGTCGGGA TGCAGGACCA GGCGTTTCTT
GCTCCCGAGG CGGCCCTGGC GATGCCGGCC GCCGATGGTG GGGTGGACCT GCGGGTGGCG
ACCCAGTGGC TGCATTCGGA CCGGGAGCAG ATCGCGGCCT GCCTCGGTCT CCCGGAGGAG
CTCGTCCGTC TCACCCTGGC CGGTGTGGGG GGTGCCTTCG GCGGCCGGGA GGACGTCACC
CTTCAGATCC ACGGCGCCCT GCTCGCCCGG GCTACGGGGC TTCCGGTGCG GATCGCCTAC
GACCGGGTTG AGTCCTTCCT GGGCCATCCG CACCGGCATC CGGCCCGGAT GTGGTTCCAG
CACAGCGCCA CCGCCGACGG AAACCTGGTC AGCGTGCGGG CACGGCTGGT GCTGGATGGC
GGTGCCTACG CGTCGTCCTC GCCGGCGGTG CTGGCGAACG CGGTCACCCA TGCCGCGGGT
CCGTACCGGG TCCCGAACGC CCACCTGCAC GGAGTCGTCG TGCGGACCAA CAACCCCCCG
TGCGGCGCCA TGCGGGGGTT CGGGGTGCCG CAGGTGACCA TCGGTCACGA GGCCCAGATG
GACCGGCTGG CCGACGCCCT CGGCATGGAT CCGGTGGACC TGCGCGTCCG CAATGCCGTC
CGACCGGGGG ATGTGCTGCC CACTGGTCAG GTGATGGGCG CACCGCTGCC GGCGCGGGAG
GTCATCGAGG CGGTGGCCTC GCGTCCGCTC CCGCCGGCGA TGCCGGCGAA CGTCGCGGTG
ACCGCGTTGC CCGGCGGCCG ACCGGCCGCG GCCGAACCGA GCCGGGTCCG TCGGGGGGTC
GGCTACGCCC TGGCCTACAA GAACCTGCTC TTCTCGGAGG GCATGGACGA CTCCTCCGTC
GCCCGTGCCC GCCTGGAGCT GGCTGAGGAC GGAACGGTAC GGGTCCGGCT GCACAGCGCG
TGCGCCGAGG TGGGCCAGGG GTTTGTGACG ATCGCGGGGC AGATCGCCCG CACCGAGCTC
GGCGTCGAAC AGGTCGTGTT GGCGCCCGCG GACACCGCGG TCGGCAGTGC CGGATCGACC
AGCGCGTCCC GGCAGACCTG GATGAGCGGA GGCGCCGTGC GCGGAGCCTG CGCCGCGGTC
GCCGATCGCC TGCTCGCCCG GGTCGCCCGC ACCGCGGGGC TGCCCGCGGA GGTCGTCGAG
GCACCTCGAC GGACGCTGAC CGTCAACGCC GGGGAGATCG TCGGGGTGGA GGCCGGGTTG
CGGGTTCCGC TCGCCGAGGC GCTGGCCGAC GGGCCGATCG AAGCGGAGTA CACCTTCCAC
CACCGGCGTA CCTCCGCGCT GGACGCCGAC GGACAGGGCG ATCCGCACGT GGCCTTCGCC
GCCGCGGCGC ACCGCGCGGT TGTCGATGTC GATGTCGACC TCGGTCTCGT GCGGGTCGTG
TCGATGGCGC TGGCCCAGGA CTGCGGTACG GTGCTCAACC CCCTGGCGCT GCGTGGTCAG
GTCGAGGGGG GAACTGCCCA GGGGCTGGGC CTCGCCGTCA TGGAGGAGCT GGTCACGGTG
GACGGGGTGG TGGTCAATCC CACGTTTCAC GACTATCTGC TGCCGACCAT CGCCGACGTC
CCGGACCTCG ATTTCGTCGC CGTCACCCAT CCGCAGCCGG ATGCGCCCTA CGGGGTGAAG
GGCGTGGGGG AGGCGCCTAC CTGTACCGCG ACCCCGGCGA TCATCGCGGC GATCCGGGTC
GCCGTCGGAC GGGATCTGCG GCGCGTTCCG GTACGACCCG AGGACCTCGT CACCATCTCT
CCGATGACCG CGCCTCCGAC GACCGCGCCT CCGACGACGC CGGGACAAGG TGTTCCGGCG
GCATGA
 
Protein sequence
MSLGIGRPVR RPDGPDKVTG SFSYVGDLRV PGMVHARTLR SPHARARIRR VDVDAARRLP 
GVVGMVTAAD VPGMATYGLI VADQPVFAAT EIRYAGEPVA AVAAVDVRTA RRALAAIEVD
YEPLAPSTDP DRVWQPDAEP LHPAGNLYRE IELRHGDPDA LGPVVVEDQY LVGMQDQAFL
APEAALAMPA ADGGVDLRVA TQWLHSDREQ IAACLGLPEE LVRLTLAGVG GAFGGREDVT
LQIHGALLAR ATGLPVRIAY DRVESFLGHP HRHPARMWFQ HSATADGNLV SVRARLVLDG
GAYASSSPAV LANAVTHAAG PYRVPNAHLH GVVVRTNNPP CGAMRGFGVP QVTIGHEAQM
DRLADALGMD PVDLRVRNAV RPGDVLPTGQ VMGAPLPARE VIEAVASRPL PPAMPANVAV
TALPGGRPAA AEPSRVRRGV GYALAYKNLL FSEGMDDSSV ARARLELAED GTVRVRLHSA
CAEVGQGFVT IAGQIARTEL GVEQVVLAPA DTAVGSAGST SASRQTWMSG GAVRGACAAV
ADRLLARVAR TAGLPAEVVE APRRTLTVNA GEIVGVEAGL RVPLAEALAD GPIEAEYTFH
HRRTSALDAD GQGDPHVAFA AAAHRAVVDV DVDLGLVRVV SMALAQDCGT VLNPLALRGQ
VEGGTAQGLG LAVMEELVTV DGVVVNPTFH DYLLPTIADV PDLDFVAVTH PQPDAPYGVK
GVGEAPTCTA TPAIIAAIRV AVGRDLRRVP VRPEDLVTIS PMTAPPTTAP PTTPGQGVPA
A