| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0832 |
|---|
| Symbol | ureC |
|---|
| ID | 3905109 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 971359 |
|---|
| End bp | 973086 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637878165 |
|---|
| Product | urease subunit alpha |
|---|
| Protein accession | YP_479945 |
|---|
| Protein GI | 86739545 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0804] Urea amidohydrolase (urease) alpha subunit |
|---|
| TIGRFAM ID | [TIGR01792] urease, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCCGAC TCGACCGCTC CCGCTACGCG GCGCTGTACG GCCCCACGGT CGGCGACCGT
ATCCGGCTCG CGGACACCGA CCTGTTCATC GAGGTGACGG AGGACCGCAG CCGCGGGCCG
GCGGGCACCG GGACCGGTGA CGAGGCCGTC TTCGGGGGCG GCAAGGTCAT CCGTGAGTCG
ATGGGGCAGT CCCTGGCAAC CCGCGCCGAG GGTGCGCCCG ACCTCGTCAT CACCGGCGCC
GTCGTTCTCG ACCACTGGGG TGTGGTCAAG GCCGACGTGG GGATCCGCGA TGGCCGGATC
GTCGCGCTGG GTAAGGCCGG CAACCCGGAC ACAATGGACG GCGTCCATCC CGAGCTGGTG
ATGGGGCCCG GCACCGAGAT CATCGCCGGT AACGGGAAGA TCCTCACCGC CGGCGCGGTG
GACTGCCACG TCCATCTGAT CTGCCCGCAG CAGGTTCCGG AGGCGCTGGG CGCCGGCATC
ACCACGCTGA TCGGCGGCGG CACCGGCCCG GCCGAGGGCA CGAAGGCGAC GACGGTGACG
CCCGGATCCT GGAACCTGGC GCGGATGCTG TCCGCGCTGG ACGACTGGCC GGTCAACGTT
GTCCTGCTCG GCAAGGGCAA CACGGTCAGC GACGAGTCGA TGTGGGAACA GCTGCGCGCC
GGGGCGGCCG GCTTCAAGCT GCACGAGGAC TGGGGGACGA CGCCGGCCGC AATCGACGCC
TGCCTGCGGG TCGCCGACGC CGCCGGCGTC CAGGTTGCGC TGCACTCCGA CACCCTGAAC
GAGGCCGGCT TCGTCGAGGA CACGCTGGCC GCCATCGCCG GCCGGGCGAT CCATGCGTAC
CACACCGAGG GGGCCGGCGG CGGGCATGCC CCGGACATCA TCACGGTCGC GGCCGCCGGC
AACGTGCTGC CGTCATCGAC GAATCCGACC CGCCCGCACA CCGTCAACAC CCTCGACGAG
CACCTCGACA TGCTGATGGT CTGTCACCAT CTCAACCCCA GCGTGCCCGA GGACCTGGCC
TTCGCCGAGA GCCGGATCCG GCCGTCGACG ATCGCCGCCG AGGACATCCT GCACGACCTG
GGCGCGATCT CGATGATCGG TTCGGACTCG CAGGCGATGG GCCGGATCGG CGAGGTCGTC
CTGCGTACCT GGCAGACCGC GCATGTGATG AAGCTCCGGC GCGGGTCCCT GGCCGGCGAC
GATCGGGCCG ACAACACCCG GGCCCGACGC TACATCGCCA AGTACACGAT CTGCCCGGCG
GTGGCGCACG GCCTGGACGC GGAGATCGGC TCGGTGGAGC CCGGCAAGCT CGCCGACCTG
GTGCTGTACG ACCCGGCGTT CTTCGGGGTG CGGCCGTCGC TGGTCCTCAA GGGCGGGTTC
ATCGCCTGGG CCGCGATGGG CGATGCGAAC GCCTCCATCC CGACCCCGCA GCCGGTGCTG
CCCCGGCCGA TGTGGGGAGC CGCCCGTGGT CCGGCCGCCG CGTCGTCGTT GATCTTCGTT
GCCCCGGCGG CGATCGAGGA CGGGCTGCCC GGACGGCTGG GGCTCGCCAC CCCGGTGGTG
CCGGTCGCGG ATGTGCGCCG CCGCGGCAAG GCGGATCTTC CCGAGAACAC CGCGACACCG
GACATCCGGG TGGACCCCGA CACGTTCACC GTCACGGTGG ACGGTGAGGC GATCGAGGCG
GATCCGGTGA GCGAACTCCC GATGACCCAG CGCTACTTCC TGTTCTGA
|
|---|
| Protein sequence | MSRLDRSRYA ALYGPTVGDR IRLADTDLFI EVTEDRSRGP AGTGTGDEAV FGGGKVIRES
MGQSLATRAE GAPDLVITGA VVLDHWGVVK ADVGIRDGRI VALGKAGNPD TMDGVHPELV
MGPGTEIIAG NGKILTAGAV DCHVHLICPQ QVPEALGAGI TTLIGGGTGP AEGTKATTVT
PGSWNLARML SALDDWPVNV VLLGKGNTVS DESMWEQLRA GAAGFKLHED WGTTPAAIDA
CLRVADAAGV QVALHSDTLN EAGFVEDTLA AIAGRAIHAY HTEGAGGGHA PDIITVAAAG
NVLPSSTNPT RPHTVNTLDE HLDMLMVCHH LNPSVPEDLA FAESRIRPST IAAEDILHDL
GAISMIGSDS QAMGRIGEVV LRTWQTAHVM KLRRGSLAGD DRADNTRARR YIAKYTICPA
VAHGLDAEIG SVEPGKLADL VLYDPAFFGV RPSLVLKGGF IAWAAMGDAN ASIPTPQPVL
PRPMWGAARG PAAASSLIFV APAAIEDGLP GRLGLATPVV PVADVRRRGK ADLPENTATP
DIRVDPDTFT VTVDGEAIEA DPVSELPMTQ RYFLF
|
|---|
| |