| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0823 |
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| Symbol | |
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| ID | 3905100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 959770 |
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| End bp | 961995 |
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| Gene Length | 2226 bp |
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| Protein Length | 741 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637878156 |
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| Product | squalene cyclase |
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| Protein accession | YP_479936 |
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| Protein GI | 86739536 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.671451 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTGA CCTCGGACCC GTCCCCGGCT GCTCCAAAGG CCGCGAAGAG CTCGAAGCGC
GTTAACATTC CCGCGCCCGC CACGCCCGAC GCTTACGGGA TCTCCCGGTC CTCGCCACCG
CTGTCCGGCG GTGGTGTGTC CGGCGGTGGT GTGTCCGGCG GTGGCGCGGC GACCGCCGAC
GGCACCCCGC CCACGACGCA GACCTCGGTC GATCCGGACC TGGCCGCGGC GATGACCGCG
GCCAACCAGG CTCGGGACCA CCTCCTCGGG CTGCAGTCCG AGGAGGGCTG GTGGAAGGGC
GACCTCGAGA CGAACGTCAC GATCGACGCC GAACACCTGT TCATGAAGCA GTTCCTCGGC
ATCCGCACCG AGGAGGAGAC CGAGCCGATC GCCCGGTGGG TGCGGTCCCA GCAACTCGCG
GACGGCGGCT GGGCCACGTA CTACGGCGGA CCGGCCGAGC TGTCCACCAC GGTCGAGGCG
TACATCGCCC TGCGTCTGGC CGGTGACGAG CCCGACGCCC CGCACATGGC GGCGGCGGCC
GCGCTCATCC GCTCCCAGGG CGGGGTGGCG GCCGCCCGGG TGTTCACCCG CATCTGGCTG
GCGACCTTCG GCGAGTGGTC CTGGGACGAC GTGCCCGTCC TGCCGCCGGA ACTGATCTTC
CTGCCGTCCT GGTTCCCGCT GAACGTCTAC GACTTCGGCT GTTGGGCCCG CCAGACGATC
GTCGCGTTGA CGATCGTCGG GTCGCTCCGG CCCGTGCGCG ACCTCGGCTT CAGCATCGAC
GAGATCAAGG TCGCGGCACC CGTGACGCCG CCGAAGCCGG CCCCGCTGCA CAGCTGGGAA
GGCGCCTTCG AGCGGTTGGA CGCGATCCTG CACCGCTATG AGCGCCGGCC GATCAAGGTG
CTGCGCACCC TGGCGCTGCG CCGGGCCACC GAGTGGGTCG TCGCCCGCCA GGAGGCCGAC
GGGTGCTGGG GGGGCATCCA GCCGCCGTGG ATCTACTCCG TCATGGCGCT GCATCTCATG
GGATACCCCC TCAACCACCC GGTGATCGCC ACGGCGTTCC GGGGAATGGA ACGCTACATC
ATCCGGCGCG AGACCCCGGA GGGGCCGACC GCCCAGATCG AGGCATGCCA GTCGCCGGTC
TGGGACACCG CGCTCGCGGT GGTCGCGCTC TCGGACGCCG GCGTCCCCGC CGACCATCCC
GCGATGGTGC GGGCCGGCCG CTGGCTGGTC GACGAAGAGG TCAGGGTGGC CGGGGACTGG
GCGGTCCGCC GTCCGGCGCT CGCCCCTGGC GGCTGGGCGT TCGAGTTCGA CAACGACTTC
TACCCGGATA CCGACGACAC CGCCGAGGTC GTGTTGGCGC TGCGTCGCCT GCTCGGTGGC
AGCCATGTCA CCCCGGGTGG CACCGTCACC CCGAGTGGCA GCGTCACCCC GGGCGGCACC
GCCGAGCTCT CGCCGGCCGC GCGTGACCGC GCCTCCCGCG GCCTCGCGGC GGTCGACCCG
CAGCTGGCCG GGGCGATGCG CGCGGCCGCG GCCCGTGGGG TCGACTGGAG CGTCGGCATG
CGGTCGTCGG ACGGGGCCTG GGGTGCCTTC GACGCCGACA ACGTGCGGAC GCTGACAGCG
AAGATCCCGT TCTGCGACTT CGGCGAGGTT GTCGACCCGC CGTCGGCGGA CGTCACCGCC
CACATCGTGG AGATGCTGGC CGACCTCGGC CGTTCCGACC ACCCGATCAC CCGGCGGGCG
GTGCAATGGC TGCTGGACAA CCAGGAACCG GGCGGCTCCT GGTTCGGCCG GTGGGGGATC
AACCACGTCT ACGGCACCGG CGCCGTGGTT CCGGCGCTGA TCGCCGCCGG CGTTCCCGCC
GACCACCCGG CGATCACAGC CGCGGTGCGC TGGCTGCTGG AGCACCAGTC GCCCGACGGT
GGATGGGGTG AGGACCCACG CTCCTACGAC GATCCGGCCT GGATCGGTCG GGGTGAGCTC
ACCGCCTCGC AGACCGCCTG GGCCCTGCTC GCGCTGCTGG CTGTCGACCC GCACAGCAAG
GCCGTCAAAC GGGGAGTGCG CTGGCTGTGC GAGACCCAGC GGCCGGATGG GACCTGGGAC
GAGCCCCAGT TCACCGGAAC CGGTTTCCCC GGTGACTTCT ACCTCAACTA CCACCTGTAC
CGGCTGGTCT TCCCGCTGAC CGCGCTCGGT CGGTACGTGA CCCTCACCGG GGTGGCCACG
CCATGA
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| Protein sequence | MSLTSDPSPA APKAAKSSKR VNIPAPATPD AYGISRSSPP LSGGGVSGGG VSGGGAATAD
GTPPTTQTSV DPDLAAAMTA ANQARDHLLG LQSEEGWWKG DLETNVTIDA EHLFMKQFLG
IRTEEETEPI ARWVRSQQLA DGGWATYYGG PAELSTTVEA YIALRLAGDE PDAPHMAAAA
ALIRSQGGVA AARVFTRIWL ATFGEWSWDD VPVLPPELIF LPSWFPLNVY DFGCWARQTI
VALTIVGSLR PVRDLGFSID EIKVAAPVTP PKPAPLHSWE GAFERLDAIL HRYERRPIKV
LRTLALRRAT EWVVARQEAD GCWGGIQPPW IYSVMALHLM GYPLNHPVIA TAFRGMERYI
IRRETPEGPT AQIEACQSPV WDTALAVVAL SDAGVPADHP AMVRAGRWLV DEEVRVAGDW
AVRRPALAPG GWAFEFDNDF YPDTDDTAEV VLALRRLLGG SHVTPGGTVT PSGSVTPGGT
AELSPAARDR ASRGLAAVDP QLAGAMRAAA ARGVDWSVGM RSSDGAWGAF DADNVRTLTA
KIPFCDFGEV VDPPSADVTA HIVEMLADLG RSDHPITRRA VQWLLDNQEP GGSWFGRWGI
NHVYGTGAVV PALIAAGVPA DHPAITAAVR WLLEHQSPDG GWGEDPRSYD DPAWIGRGEL
TASQTAWALL ALLAVDPHSK AVKRGVRWLC ETQRPDGTWD EPQFTGTGFP GDFYLNYHLY
RLVFPLTALG RYVTLTGVAT P
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