| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0679 |
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| Symbol | sdhA |
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| ID | 3905267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 775391 |
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| End bp | 777145 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637878012 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_479792 |
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| Protein GI | 86739392 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00348299 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0897043 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAGGTCC ACAGGTACGA CGCAGTCATC GTCGGTGCGG GTGGAGCCGG CATGCGTGCC
GCCATCGAGG CGGGCACCCG CTGCCGGACC GCCGTGCTCA CCAAGCTCTA TCCCACCCGC
TCGCACACCG GCGCGGCGCA GGGCGGCATG TGTGCCGCCC TGGCCAACGT CGAGGAGGAC
AACTGGGAGT GGCACACCTT CGACACGATC AAGGGCGGTG ACTACCTGGT CGACCAGGAC
GCCGCGGAAA TCATGGCGAA GGAGGCCATC GACGCTGTCC TCGACCTGGA GAAGATGGGG
CTGCCGTTCA ACCGGACGCC CGAGGGTCGC ATCGACCAGC GCCGGTTCGG CGGCCATACC
CGCGACCACG GCAAGGCCCC GGTGCGCCGC TCCTGCTACG CGGCGGACCG CACCGGGCAC
ATGATCCTGC AGACGCTGTA CCAGCAGTGC GTCAAGCACG ACATCGAGTT CTTCAACGAG
TTCTACGTCC TCGACCTGCT ACTACAGAAG GGCGCGGCGG CCGGGGTGGT CGCCTACGAG
CTGAAGACCG GAGAGATCCA CATCTTCCAG GCCAAGTCGG TGGTGTTCGC CACCGGCGGT
TTCGGCAAGG TCTTCAAGGT CACCTCCAAC GCGCACACAC TGACCGGTGA CGGAATGGGT
CTGGCGTTCC GGCGGGGCAT CCCGCTGGAG GACATGGAGT TCTTCCAGTT TCATCCGACC
GGCATCTGGA AGATGGGGAT TCTCCTCACC GAGGGTGCCC GCGGCGAGGG CGGAATCCTA
CGCAACAAGG ACGGCGAACG CTTCATGGAG CGCTACGCCC CGACCATCAA GGACCTTGCG
CCACGCGACA TGGTGGCTCG CGCCATCTAC ACCGAGATCC GTGCCGGCCG CGGCTGCGGC
CCGGACGCCG ACCACGTCTA CCTTGACCTC ACCCACCTGC CGCCGGAGCA CCTCGACGCA
AAGCTGCCCG ACATCACCGA GTTCGCTCGG ACCTATCTCG GCATCGAACC GTACAACGAC
CCGATCCCGA TCCAGCCGAC GGCGCACTAC GCGATGGGCG GCATCCCGAC CAACGTGGAC
GCGCAGGTGC TCGCGGACAA CGACACGGTC GTGCCCGGTC TGTACGCGGC CGGCGAGGTG
GCGTGCGTGT CCGTGCATGG CGCGAACCGG CTGGGCACCA ACTCGCTGCT CGACATCAAC
GTATTCGGCC GGCGGGCTGG CATCGCCGCC GCCGAGTATG CGAACGCGAA CGCACAGCAC
GTCGACCTCC CGGAGAACCC GGCGTCGTTC GTCGAGGACC TGCTCGGGCG CCTGCGCGCG
GGCGCCGGAA CCGAGAACGC GGCCGCGATC CGGCGCGAAC TGCAGGAGTC GATGGACGTC
AACGCCTCGG TGTACCGGAC GGAGGCGACG CTCAAGCAGG CGCTGAGCGA CATCTCCGGC
CTCAAGACGC GTTACCAGCG GGTGGGCGTG TCCGACCGGG GGCGTCGCTA CAACACCGAA
CTGCTCGAAG CGGTGGAGCT CGGCTTCCTG CTGGACCTCG CCGAGGTCCT GGTCATCGGG
GCGATGGCCC GCAACGAGTC CCGCGGCGGC CACTCCCGTG AGGACTACCC GAACCGGGAC
GACGTCAACT TCATGCGCCA CACGATGGCC TACCGGTCGG GGCCGCTGGT GGCCGCCTCG
CCGGAGGCGG AGATCCGCCT GGACTACAAG CCGGTTGTCA TGACCCGCTA CCAGCCGATG
GAGCGCAAGT ACTGA
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| Protein sequence | MQVHRYDAVI VGAGGAGMRA AIEAGTRCRT AVLTKLYPTR SHTGAAQGGM CAALANVEED
NWEWHTFDTI KGGDYLVDQD AAEIMAKEAI DAVLDLEKMG LPFNRTPEGR IDQRRFGGHT
RDHGKAPVRR SCYAADRTGH MILQTLYQQC VKHDIEFFNE FYVLDLLLQK GAAAGVVAYE
LKTGEIHIFQ AKSVVFATGG FGKVFKVTSN AHTLTGDGMG LAFRRGIPLE DMEFFQFHPT
GIWKMGILLT EGARGEGGIL RNKDGERFME RYAPTIKDLA PRDMVARAIY TEIRAGRGCG
PDADHVYLDL THLPPEHLDA KLPDITEFAR TYLGIEPYND PIPIQPTAHY AMGGIPTNVD
AQVLADNDTV VPGLYAAGEV ACVSVHGANR LGTNSLLDIN VFGRRAGIAA AEYANANAQH
VDLPENPASF VEDLLGRLRA GAGTENAAAI RRELQESMDV NASVYRTEAT LKQALSDISG
LKTRYQRVGV SDRGRRYNTE LLEAVELGFL LDLAEVLVIG AMARNESRGG HSREDYPNRD
DVNFMRHTMA YRSGPLVAAS PEAEIRLDYK PVVMTRYQPM ERKY
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