| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0609 |
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| Symbol | rpsD |
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| ID | 3903477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 692551 |
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| End bp | 693180 |
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| Gene Length | 630 bp |
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| Protein Length | 209 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637877942 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_479722 |
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| Protein GI | 86739322 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.19344 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCCGTT ACACCGGCGC GGACTGCAAG CGTTGCCGCC GCGAGAAGAC CAAGCTGTTC
CTCAAGGGCA GCAAGTGCGA CACCCCGAAG TGCCCGATCG AGATCCGGCC CTACCCGCCG
GGCGAGCACG GCCGTGGCCG CACCAAGGAC TCCGAGTACC TGCTGCAGAA GCGCGAGAAG
CAGAAGTGCG CCCGGATCTA CGGCGTGCTG GAGAAGCAGT TCCGGGGCTA CTACGACGAG
GCGAATCGCC GGGCCGGCAA GACCGGTGAC GAGCTGCTGA AGATCCTTGA GTCGCGGCTC
GACAACGTCG TGTACCGGGG TGGCTTCGCA CCCTCGCGGG ACGCCGCCCG TCAGGCTGTC
CGGCACGGCC ACGTCCAGGT GAACGGCCGC AAGGTCGACA TCCCCAGCTA TCGGATCAGC
GAGAACGACA TCGTCGAGAT CGCGCCGAAG GCCCGGGAGC TCACCCCGTT CATCGTGGCC
CGGGAGACCG CGGGTCAGGG TCGGGCCGTT CCAGCCTGGC TGGAGGTGAT CCCGAGCCAG
CTGCGGATCC TGGTGCACTC GCTGCCGGCG CGGCAGGTGA TCGATACCCA GGTGCAGGAA
CAGCTGATCG TCGAGCTTTA CTCCAAGTAA
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| Protein sequence | MARYTGADCK RCRREKTKLF LKGSKCDTPK CPIEIRPYPP GEHGRGRTKD SEYLLQKREK
QKCARIYGVL EKQFRGYYDE ANRRAGKTGD ELLKILESRL DNVVYRGGFA PSRDAARQAV
RHGHVQVNGR KVDIPSYRIS ENDIVEIAPK ARELTPFIVA RETAGQGRAV PAWLEVIPSQ
LRILVHSLPA RQVIDTQVQE QLIVELYSK
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