| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0599 |
|---|
| Symbol | rpsE |
|---|
| ID | 3905882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 686165 |
|---|
| End bp | 686773 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637877932 |
|---|
| Product | 30S ribosomal protein S5 |
|---|
| Protein accession | YP_479712 |
|---|
| Protein GI | 86739312 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0098] Ribosomal protein S5 |
|---|
| TIGRFAM ID | [TIGR01021] ribosomal protein S5, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGGCC AGCAGCGCCG CGGCGGCGGC TCCGGCGGCT CGGACCGTCG GGAACGCCGG
GACCGGTCGG GCAGCGGCCC GGCGCAGGAG AAGAACGCCT ACGTCGAGCG GGTTGTCGCG
ATCAACCGCG TGGCGAAGGT TGTCAAGGGC GGACGCCGGT TCAGCTTCAC GGCGCTCGTT
GTGGTCGGTG ACGCGGACGG GACCGTGGGC GTCGGCTATG GCAAGGCCAA GGAGGTTCCG
GCCGCCATCG CCAAGGGCGT CGAAGAAGCC AAGAAGCACT TCTTCAAGGT GCCCCGGATC
GGTTCGACGA TTCCGCACCC GGTGCAGGGC GAGGAGGCGG CCGGCGTCGT GCTGCTCAAG
CCCGCCTCGC CCGGTACCGG GGTCATCGCC GGTGGTCCGG TCCGTGCCGT GCTGGAGTGC
GCCGGTGTGC ACGACGTGCT CTCGAAGTCG CTCGGCTCAT CGAATCCGAT CAACATCGTG
CACGCGACGG TCGCCGCTCT GCGTGGCCTG ATGCGTCCCG AGGAGATTGC CGCCCGTCGC
GGCCTGCCGC TGGAGGATGT CGCTCCGCCG GCCATGCTGC GCGCCCGTGC GGCGGGAGCC
AGCGTCTGA
|
|---|
| Protein sequence | MPGQQRRGGG SGGSDRRERR DRSGSGPAQE KNAYVERVVA INRVAKVVKG GRRFSFTALV
VVGDADGTVG VGYGKAKEVP AAIAKGVEEA KKHFFKVPRI GSTIPHPVQG EEAAGVVLLK
PASPGTGVIA GGPVRAVLEC AGVHDVLSKS LGSSNPINIV HATVAALRGL MRPEEIAARR
GLPLEDVAPP AMLRARAAGA SV
|
|---|
| |