| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0583 |
|---|
| Symbol | rplD |
|---|
| ID | 3905753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 678341 |
|---|
| End bp | 679078 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637877916 |
|---|
| Product | 50S ribosomal protein L4 |
|---|
| Protein accession | YP_479696 |
|---|
| Protein GI | 86739296 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0088] Ribosomal protein L4 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGGG TGGCCACATC CGACCCGAGC GTCACCGCGC GCACCGTCGC GGTGCACGCG
CCGAACGGGG GCGAAGGCGG CAGCGTCGAG CTGCCCGGTG GCGTGTTCGA CGTGCCGCTC
AACATCCCGC TGATCCACCA GGTCGTGGTG GCGCAGCTCG CGGCGGCCCG CCAGGGCACG
CACGACACGA AGACCCGCGG CGAGGTCCGC GGCGGTGGCC GCAAGCCGTA TCGGCAGAAG
GGCACCGGCC GGGCCCGGCA GGGATCGCTG CGGGCTCCGC AGTTCACCGG CGGTGGCACC
GTGCACGGCC CCACACCGCG CAGATACGAC CAGCGGACCC CGAAGAAGAT GAAGGCCGCC
GCGCTGCGCG GCGCGCTGTC CGACCGGGCC CGCAACAACC GGGTGCACGT GGTGTCCTCG
CTGGTCTCCG GCGAGACGCC GTCGACGAAG AGCGCGGTCA CCGCGCTGCG GACGATCGCC
GACACCCGCC GGGTGCTGGT GGTGGCGAGC CGTTCGGACG AGCTGACCTG GAAGAGCCTG
CGCAACGTCG CGGCGGTGCA CCTGCTCGAC CCGGGCCAGC TCAATACCTA TGACGTGCTG
GTGAGCGACG ACGTGGTCTT CATCGAGGAT GCGCTGGCCG CGTTCCTTGC TCGTGACACC
CGTCCGGCAA CCTCCACCGC CGGGACCGAG GCTGCCGCGG GCACCGAAGG TGTGGCCGGG
GCGGAGGAGA ACAAGTGA
|
|---|
| Protein sequence | MSRVATSDPS VTARTVAVHA PNGGEGGSVE LPGGVFDVPL NIPLIHQVVV AQLAAARQGT
HDTKTRGEVR GGGRKPYRQK GTGRARQGSL RAPQFTGGGT VHGPTPRRYD QRTPKKMKAA
ALRGALSDRA RNNRVHVVSS LVSGETPSTK SAVTALRTIA DTRRVLVVAS RSDELTWKSL
RNVAAVHLLD PGQLNTYDVL VSDDVVFIED ALAAFLARDT RPATSTAGTE AAAGTEGVAG
AEENK
|
|---|
| |