Gene Francci3_0555 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_0555 
Symbol 
ID3904206 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp645389 
End bp647275 
Gene Length1887 bp 
Protein Length628 aa 
Translation table11 
GC content68% 
IMG OID637877884 
Productpyruvate flavodoxin/ferredoxin oxidoreductase-like 
Protein accessionYP_479668 
Protein GI86739268 
COG category[C] Energy production and conversion 
COG ID[COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.180519 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCAGAGC AGGTCAGGGA GAGGGAGACC CGCCGGCTCG ACCGGGTCGT CGTGCGCTTC 
GCGGGCGACT CCGGCGACGG TATGCAGCTC ACCGGAGAAC AGTTCACCAG CGAGACGGCA
GCATTCGGCA ATGACCTGTC GACGCTTCCG GACTTCCCTG CCGAAATCCG CGCCCCAGCC
GGCACGCCGG CCGGTGTGTC CGGCTTCCAG CTACATTTTT CCGATCACGA CATTCTCACC
CCGGGTGACG CACCGGACGT ACTGGTTGCA ATGAACCCGG CGGCCCTGAA GGCGAATCTG
AAGGATCTGC CGCCGGGGGC CAATCTCATT GTCAACACCG ATGCATTCAC CGGCGGCAAC
CTCAAGAAAG CCGGCTATAC GACGGATCCG CTGACCGACG GCACGCTGGA TGCCTACACG
GTGCATCGGG TGCCGCTCAC CTCGATGACC ATCAACGCGG TGCACGCCGC CGAGGGTGTC
GGCGCCGGGG TCAACAAGAA GGAGGCCGAA CGAGCGAAGA ACATGTTCGC CCTGGGCCTC
ATGAGCTGGC TGTACCACCG GCCGACCGAG AGCACCGTCG GCTTCCTGGA GAAGAAGTTC
GCCAAACGGC CCGAGATCGC CGCGGCGAAC GTCGCGGCCT TCCGTGCCGG CTTCAACTAC
GGCGAGACCA CCGAGTCCTT CTCGGTCACC TACGAGGTGG CGCCGGCCCG GATGAAGGCT
GGTACCTACC GACGGATCAC CGGGAACACG GCATTGTCCT ACGGTCTGAT CGCCGCCGGC
GAGCTGACCG GCCTGCCGGT GTTCCTCGGC TCCTACCCGA TCACCCCGGC CTCGGACATC
CTGCACGAGC TGAGCCGGCA CAAGCGGTTC GGCGTGCGGA CCTTCCAGGC CGAGGATGAG
ATCGCCGGCA TCGGCGCCGC GCTCGGTGCC TCCTTCGGCG GATCACTCGG CGTGACGACG
ACCTCCGGCC CGGGTGTCGC GCTCAAAAGC GAGACCATCG GCCTCGCGGT CAGTCTCGAA
CTGCCGCTCG TGATCGTCGA CATCCAGCGC GGCGGCCCGT CCACCGGCCT GCCCACCAAG
ACCGAACAGG CCGATCTACT CCAGGCGATG TTCGGCCGCA ACGGCGAGGC TCCGGTTCCG
ATCGTCGCGC CGCGCTCCCC GGCGGACTGC TTCAACGCCG CGATCGAGGC CGCCCGCCTG
GCTACCAAGT ACCGCACGCC GGTGTTCCTG CTCTCCGACG GCTACCTGGC GAACGGCTCG
GAGCCGTGGC TGCTGCCGAC CCGCTCGGAG CTGCCGGACC TGAGCGTCGC CTTCGCCACC
GAGCCGAACC ACACCGGGCC GAAGGGGCCG GAGTTCTGGC CCTACCTGCG TGATCCGGAG
ACCCTCGCCC GGCCGTGGGC AGTCCCCGGC ACGGCGGGCC TGGAGCACCG CATCGGCGGC
ATCGAGAAGT CGGACGGCCA GGGTGCCATC TCCTACGATC CGGCCAACCA CGACCGGATG
GTGCGGCTGC GCGCGGCGAA GATCGACGGT ATCGCGAACG ATGTCGCGCC ACTGGAGGTG
GAGGACCCGT CCGGGCAGGC CCGGCTGCTC GTCCTCGGCT GGGGCTCCAC CTACGGCCCG
ATCGCGGCCG GCTGCCGCCG GGTCCGCGCC AAGGGCATGC ACGTCGCTCA GGCACACCTG
CGTCATCTCA ACCCCTTCCC CGCCAACACC GGGGACATCC TGCGGTCGTA TGACAAGGTG
CTGATTCCCG AGATGAACCT CGGGCAGCTA AGGACCCTGA TCCGGGCCGA GTACCTCGTC
GACGCGATCG GCTACAACCA GGTTCGCGGG CTGCCCTTCA AGGCCGCGGA GCTGGCGGGC
GTCTTGGAGG ACGTGATCAA CCAGTGA
 
Protein sequence
MSEQVRERET RRLDRVVVRF AGDSGDGMQL TGEQFTSETA AFGNDLSTLP DFPAEIRAPA 
GTPAGVSGFQ LHFSDHDILT PGDAPDVLVA MNPAALKANL KDLPPGANLI VNTDAFTGGN
LKKAGYTTDP LTDGTLDAYT VHRVPLTSMT INAVHAAEGV GAGVNKKEAE RAKNMFALGL
MSWLYHRPTE STVGFLEKKF AKRPEIAAAN VAAFRAGFNY GETTESFSVT YEVAPARMKA
GTYRRITGNT ALSYGLIAAG ELTGLPVFLG SYPITPASDI LHELSRHKRF GVRTFQAEDE
IAGIGAALGA SFGGSLGVTT TSGPGVALKS ETIGLAVSLE LPLVIVDIQR GGPSTGLPTK
TEQADLLQAM FGRNGEAPVP IVAPRSPADC FNAAIEAARL ATKYRTPVFL LSDGYLANGS
EPWLLPTRSE LPDLSVAFAT EPNHTGPKGP EFWPYLRDPE TLARPWAVPG TAGLEHRIGG
IEKSDGQGAI SYDPANHDRM VRLRAAKIDG IANDVAPLEV EDPSGQARLL VLGWGSTYGP
IAAGCRRVRA KGMHVAQAHL RHLNPFPANT GDILRSYDKV LIPEMNLGQL RTLIRAEYLV
DAIGYNQVRG LPFKAAELAG VLEDVINQ