| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0456 |
|---|
| Symbol | |
|---|
| ID | 3903262 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 533725 |
|---|
| End bp | 535032 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637877787 |
|---|
| Product | glycosyl transferase, group 1 |
|---|
| Protein accession | YP_479571 |
|---|
| Protein GI | 86739171 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | [TIGR03449] UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.778621 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.271812 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCTGA TCAGAAGTGG CGCCGCCCAG GTCCGCGGTG AGGCCGAACG GCGCGGGCGG
CCCAGCCGGG TCGCGATGCT GTCCATGCAC ACCTCACCAA TGGAACAGCC GGGAACGGGC
GATGCCGGGG GGCTCAACGT CTACGTCGTC GAGCTGTCTC GGCAGCTCGC GGCGCTGGGG
GTGGAGGTCG AGGTGTTCAC CCGCGCGGTG AGCAGCAAGC TGCCGACCTC GGCCGAGCTG
TTGCCGGGTG TGACGGTCCG CCACGTTGAC GCCGGCCCGT TCGAGGAGAT CCACCGGGAG
GATCTTCCCG CCTGGCTGTG TGCGTTCACC GCGGCTCTGC TGCGCGCCGA GGCCGGGCAC
GAACCAGGGT GGTTCGATGT GATCCACTCG CACTACTGGC TGTCGGGCCA GGTCGGTCTC
GCGGTGGCAC AACGATGGGG TATCCCGCTC GTGCACACCT CCCATACGCT GGCGAAGATC
AAGAACGGCG CGCTGGCCGT CGGAGACCGC CCGGAGCCGC CTGGCCGGCT ACTCGGCGAA
CAGGAGGTCA TCGGGGGGGC CACCCGGCTG CTCGCCTCCA CGCCGGACGA GTACCGGCAC
CTGATCGATC TGTACGACGC GGCGTCGGAC CGGGTCGACG TCGTCGCGCC CGGCGTCGAC
CTTGAGGTCT TCCGGCCAGG TGACATGGCG CAGTCCCGGG CCCGCGTCGG CGTGGATCCC
GCCGACGACC TGCTGTTGTT CGTCGGTCGG ATCCAACCGC TCAAGGCGCC CGATCTGCTG
CTGCGCGCCG CCGCGGAACT GCTGCGGCGC GATCCCGCCC GCCGCTCGCG GCTCACCGTC
GCCGTGGTCG GCGGCCCCAG CGGATCCGGT CTGGAACAAC CCGACGCCCT GGTCAAGCTC
GCGGCGTATC TCGGGATCTC CGATCGCGTC CGCTTCCAAC CGCCGGCCCC GCAGCAGGAA
CTCGTCCACT GGTACCGCGC GGCCACCGCC GTCGTCGTCC CCAGTCACAG CGAGAGCTTC
GGCCTCGTCG CGCTCGAGGC CCAGGCCTGC GGCACCCCGG TGGTCGCCGC GGCGGTCGGG
GGCCTGCGCA CCGCGGTCGC CGACGGTGTC TCCGGGCTGC TCGTCTCCGG TCGGACCCCC
GCCGTCTATG CCGACGCGCT GGACCGGCTG CTGCGCCAAC CACGATGGCG GGCCCGGCTC
TCCGCCGGAG CGGTGGCCTG GGCCGGTGGG TTCGGCTGGT CGGCCACGGC CCATGGCGTG
CTGCGCAGCT ACCGGCACGC GCTGAGCCCC ACCGCCGTCG CCGTCTGA
|
|---|
| Protein sequence | MRLIRSGAAQ VRGEAERRGR PSRVAMLSMH TSPMEQPGTG DAGGLNVYVV ELSRQLAALG
VEVEVFTRAV SSKLPTSAEL LPGVTVRHVD AGPFEEIHRE DLPAWLCAFT AALLRAEAGH
EPGWFDVIHS HYWLSGQVGL AVAQRWGIPL VHTSHTLAKI KNGALAVGDR PEPPGRLLGE
QEVIGGATRL LASTPDEYRH LIDLYDAASD RVDVVAPGVD LEVFRPGDMA QSRARVGVDP
ADDLLLFVGR IQPLKAPDLL LRAAAELLRR DPARRSRLTV AVVGGPSGSG LEQPDALVKL
AAYLGISDRV RFQPPAPQQE LVHWYRAATA VVVPSHSESF GLVALEAQAC GTPVVAAAVG
GLRTAVADGV SGLLVSGRTP AVYADALDRL LRQPRWRARL SAGAVAWAGG FGWSATAHGV
LRSYRHALSP TAVAV
|
|---|
| |