| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0433 |
|---|
| Symbol | |
|---|
| ID | 3903622 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 515596 |
|---|
| End bp | 516417 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637877765 |
|---|
| Product | shikimate dehydrogenase |
|---|
| Protein accession | YP_479549 |
|---|
| Protein GI | 86739149 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCACCGG CCGCGCATGC TGTCACGGGC GCCACCCGTC TGTTCGCCGT CGTCGGGGAT
CCCGTCGAAC AGGTACAGGC GCCGTCGTTA CTCAATCCGC TGTTCGACGA ACTCGGGCTT
GACGCCGTCC TCGTACCGGT GCACGCCCGG CAGGCGGACT TCCCCGCCGT GCTCGATGGA
CTCCGGCGCA TCGAGAACCT GGACGGCATC CTGATCACGA TTCCGCACAA GGCCGCCGCC
TGCGCCCTTG CCGACGAACG CAGTCCGGCG GCCGCGATCA GCGGGAGCGC CAACGCACTG
CGCCGCGGCC CGTCCGGGCG CTGGCAGGCC GACAACTTCG ACGGAGCGGG ATTCGTCCGG
GGACTGACGG CCGCCGGACG TCCGGTGGCC GGAACGCGGG TCTCGCTACT GGGCGCGGGC
GGCGCCGGCA GCGCCATCGC GGCCGCGCTG CTCGACGCCG GCAGCACACG GCTGTCGATC
TACGATCCGG ATCGGGAGAA GCGCGACGGC CTGCTCGCCC GCCTCGACGA GCATTGGCCG
GACCGCGCCG TCGGCGTCGC GACACCCCTG CTGCACGATG TCGATCTCGC GGTGAACGCC
ACGCCGCTCG GCCTGCGTCC GAACGATCCG CTCCCCTTCC CGCCGGATGG GCTCGCGGCG
GGCTGCGTCG TGGCGGACAT CATCATGAAA CCGCCCGACA CCCGCCTGCT GCGGGCCGCG
GCCGCACTCG GCCTGCCGAC CCATCCGGGC ATCCACATGC TCGCCCACCA GATCGGCTTC
TACCGCTCGT TCTTCGATCT CGTCCCGGCG GCACCCGCCT GA
|
|---|
| Protein sequence | MPPAAHAVTG ATRLFAVVGD PVEQVQAPSL LNPLFDELGL DAVLVPVHAR QADFPAVLDG
LRRIENLDGI LITIPHKAAA CALADERSPA AAISGSANAL RRGPSGRWQA DNFDGAGFVR
GLTAAGRPVA GTRVSLLGAG GAGSAIAAAL LDAGSTRLSI YDPDREKRDG LLARLDEHWP
DRAVGVATPL LHDVDLAVNA TPLGLRPNDP LPFPPDGLAA GCVVADIIMK PPDTRLLRAA
AALGLPTHPG IHMLAHQIGF YRSFFDLVPA APA
|
|---|
| |