| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0429 |
|---|
| Symbol | |
|---|
| ID | 3903618 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 511412 |
|---|
| End bp | 512578 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637877761 |
|---|
| Product | DegT/DnrJ/EryC1/StrS aminotransferase |
|---|
| Protein accession | YP_479545 |
|---|
| Protein GI | 86739145 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGGTA GAGCACGGCC AGCGCCGGAG TTGCCGGCCT GGCCGCAGTA CTCCGACGAG
GAGCGCGGTG GTCTGATCCG GGCGTTGGAA CAGGGCCAGT GGTGGCGCAT GGGCGGCAGT
GAGGTCGACG CTTTCGAGCG GGAATTCGCT GCCTACCACG GGGCCGGCTA CGCCCTCGCC
GTAACCAACG GGACGCACGC GTTGGAGCTC GCGTTGCAGG TCCTGGGGGT TGGACCCGGC
AGTGAGGTCA TCGTGCCGGC GTTCACCTTC ATCTCCTCCT CGCAGGCGGC CCAGCGCCTC
GGCGCGGTGG CCGTGCCGGT CGACATCGAC CCGGGCACGT ACTGCATCGG GGTCACCGCC
GCGGCGGCCG CGGTGACCCC GCGCACTCGG GCGATCATGC CGGTGCATAT GGCGGGCCAG
GTCTGCGACA TGGACGCCCT GGCGAAGCTG TCCGCGGATG CCGGGGTTCC GCTGATCCAG
GACGCGGCGC ACGCGCACGG TGCGCAGTGG CAGGGTAAGA AGCTCGGCGA GCTGGGCTCG
GTGGCGGCGT TCAGCTTCCA GAACGGCAAG CTCATGACCG CCGGCGAGGG CGGCGCCGTC
ACCTTCCCCG ACGCCGAGCT GTACGAACTC GGCTTCCTGC GGCACAGTTG CGGGCGGCCA
CGCACGGACC GCCGGTACCT CCACCAGACC TCCGGGTCGA ATTTCCGGCT CAACGAGTTC
TCCGCCGCGG TCCTGCGTGC CCAGCTCGGC CGCCTGGCCG GCCAGATTGA CACGCGTGAG
GAGCGCTGGC CGGTGCTGGC GGGCGCGCTT GCCGACATCC CGGGCGTCGT CCCGCAGGGC
CGCGACGACC GGTGTGACCG CAATCCGCAC TACATGGCGA TGTTCCGGTT GCCCGGGTTC
AGTGAGGAGC GCCGCAACGC GTTCGTCGAC GCCCTTGTGG ACCGCGGGCT GCCCGCTTTC
GCCGCGTTCC GGGCGATCTA CCGGTCCAAC GGCTTCTGGG AGACCGGCGC CCCGGACGAA
ACGGTGGACG AGATCGCGAA GCGCTGCCCG AACACCGAGG CGATCAGCGC GGACGGCGTC
TGGCTGCACC ATCGGACGTT GCTCGGCACC GAAGAACAGA TGCACCAGGT CGCGGCCATC
GTGGCCGAGA CCCTGGCCGA GCTGTGA
|
|---|
| Protein sequence | MIGRARPAPE LPAWPQYSDE ERGGLIRALE QGQWWRMGGS EVDAFEREFA AYHGAGYALA
VTNGTHALEL ALQVLGVGPG SEVIVPAFTF ISSSQAAQRL GAVAVPVDID PGTYCIGVTA
AAAAVTPRTR AIMPVHMAGQ VCDMDALAKL SADAGVPLIQ DAAHAHGAQW QGKKLGELGS
VAAFSFQNGK LMTAGEGGAV TFPDAELYEL GFLRHSCGRP RTDRRYLHQT SGSNFRLNEF
SAAVLRAQLG RLAGQIDTRE ERWPVLAGAL ADIPGVVPQG RDDRCDRNPH YMAMFRLPGF
SEERRNAFVD ALVDRGLPAF AAFRAIYRSN GFWETGAPDE TVDEIAKRCP NTEAISADGV
WLHHRTLLGT EEQMHQVAAI VAETLAEL
|
|---|
| |