| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0393 |
|---|
| Symbol | |
|---|
| ID | 3903635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 464656 |
|---|
| End bp | 466224 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637877722 |
|---|
| Product | recombinase |
|---|
| Protein accession | YP_479509 |
|---|
| Protein GI | 86739109 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1961] Site-specific recombinases, DNA invertase Pin homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGGCCCG CCATCACGCT CTGGTCGGAC AATCGGGACG CCGCGTACGG GTCTGGGGTG
GTTCGCAAGC TGCGCACGAT CGGTTACCGC CGGATCTCCG ACGACCGTGA AGGGCTGGAA
GCCGGGGTCA CCCGCCAGGA CGAGGACATC CGCGAGCTTG CCGAACGGCG TGACGACGTC
GACCTGATCG ACGTGCTGAC CGACAACGAC CTGTCGGCCA CGAAGGACTA CCGGCCGGAG
TTCGAACGCA TCCTCACCAT GGCGCAGGCC GGCCAGATCG ACGCGGTAAT CGCGTGGACG
TCGAACCGCT TCCTACGCAA CCGGCCCGAC CGGATGCGCG TGATCGAACT GTTCAAGGCC
CGCAACGTCC GGCTGATCCC GGTCCGGGGC ACCACCATGG ACTTCACCTC CGCCGACGGC
CGGATGATGG CCGACATCAT CTTTTCGATC GACGCGGGAG AGGCCGAGCG CACGGCGGAG
CGTGTCGCAC GGGCAGCACA GCAGCGGGCC GAGCAGGGCC GCCACCACGG CGGACCCCGG
GCGTACGGCT ACGGGCCGAT CGTCGGCACC GACCACGCCG GCAAGCCCGT ACGGGACTTC
TACGCCCTCG TGCCGGACGA GGCGGCGGTT ATCCGCCGCA TCGCGGCCAA CATCCTGGCG
GGCGTGCCGT TGGCGGCGAT CGCCCGCACG CTCAACGCCG AGGCGGTCCC GACCGTGACG
AAGGCCCACC GGCCGATCTG CCCGAACAAC GTCAAGGGCC GTCGGGCGTG GACCGACTGC
CCATGCCCGT ACCGCGGGTG GAACGCGACC ACCCTCAAGG AGATGATGGT CAACCCGCGT
CTGATCGGCA TGCGCGGCTA CCAGACCCGC AGCACGCGGC GCAGCACGGG AACCATCGCG
GTCATGGGCC AAGCGGTGTG GCCGGCGATT CTGGACGTCG ATACGTGGGA GCAGATCCGG
GCGATCCTCA CGGACGCCTC GCGGCGGACC AACACCAACG CGCAGAAGCT TCGGCGCATG
CTGGCGGGGT TCGTCTACTG CGCCTCGTGC GGGCACAAGC TGACCGGGAA CGGCACGAAC
GGGACGCGGC TCTACTGCCA GCGGCGTGAC GGCCGCTGTC CGGCCAAGGT CCGAATCGGG
GAAGCCTTCC TCGTCGGGCT GGTCTCCCGT GCCGTGCGGG GGCGTCTCGA CGAGCTGGTT
CTCCAGCCTG TGGCCATGGA CGACCCGGCC GCCGCTGAGC TGGCGACGTT GGAGGCCCGC
AAGAGCGCGC TGGCGGACCG GTGGGCATCC GGGAAGATGG ACGATGACGC CTACGACGAT
GCCCACAAGG CCATCGTCCG CCAGATCCGC GCGGCCGAGG CCCGGATGCA CACCAGCGCG
CGACGGCGCG CCACGCTGCC CGTGGAGGGC GCCGTGGGCT GGGACGGGCT CGGCGAGGAC
ATCGCGGCCA AGCGGGTGAT CCTCACCCAA CTGATCGACG GTGTGATCGT CGGCGGAAAC
GGGACTGTCG AGGGTGATGA TGTTCAGCGT GTGCGGATCG TGTGGCGAGA CCTGAACGAC
CCCCGGTAG
|
|---|
| Protein sequence | MRPAITLWSD NRDAAYGSGV VRKLRTIGYR RISDDREGLE AGVTRQDEDI RELAERRDDV
DLIDVLTDND LSATKDYRPE FERILTMAQA GQIDAVIAWT SNRFLRNRPD RMRVIELFKA
RNVRLIPVRG TTMDFTSADG RMMADIIFSI DAGEAERTAE RVARAAQQRA EQGRHHGGPR
AYGYGPIVGT DHAGKPVRDF YALVPDEAAV IRRIAANILA GVPLAAIART LNAEAVPTVT
KAHRPICPNN VKGRRAWTDC PCPYRGWNAT TLKEMMVNPR LIGMRGYQTR STRRSTGTIA
VMGQAVWPAI LDVDTWEQIR AILTDASRRT NTNAQKLRRM LAGFVYCASC GHKLTGNGTN
GTRLYCQRRD GRCPAKVRIG EAFLVGLVSR AVRGRLDELV LQPVAMDDPA AAELATLEAR
KSALADRWAS GKMDDDAYDD AHKAIVRQIR AAEARMHTSA RRRATLPVEG AVGWDGLGED
IAAKRVILTQ LIDGVIVGGN GTVEGDDVQR VRIVWRDLND PR
|
|---|
| |