| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0377 |
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| Symbol | |
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| ID | 3903428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 443682 |
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| End bp | 446747 |
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| Gene Length | 3066 bp |
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| Protein Length | 1021 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637877706 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_479493 |
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| Protein GI | 86739093 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.540198 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGACATCT GGGATGACCT TGCGCAGCGT AACAGCGCTC ACCTGCGGGA ACGATTCCTG
ACGGGGGACC TGGTAGCGGA AGGACCACAA AACGCGATTT TGGGTTCGTG GTGGCGCAGC
CAGGTACTGA ACGTGAGCCC GGACCGGTGC TCCCCCGTCT ATGATCCGGA TCTTGATCTG
GACACGCGCC TGGTCCGCGC GGCCGACCCG GTACTCGACC GACTGGCATC CATGATCGCC
GGGACCTGGG TGTGCGTGTG TCTCACCGAC GACCAGGCAA GAATACTGGC GCACCGGGTC
GGTGAGGCAT CCTTCGGCCT ACACCCTGGG TTCTGCGTCG CCGAGCACCT GGTCGGCACC
AGCGCCGTAG CCCTCGCCCT CGTGGAAAGG CGCCCCGCCC GCGTCTCGGG CGCCGAGCAC
TTTGCTGACC TCTACCAACC GGACGCGTGC ATATCCGCTC CCGTCCGCGA CCCCCTCAGC
GGGCGTATCG AAGGCGTGTT CAGCCTCATT TGCAGGCTCG CCGAGGCGAA TCCGTCGGCG
GAAGCCATGG TGGGGGAGGC TGGCCGCGCT ATCGAACATC GCCTGCTGGA ACAGGCGAGC
GAGCGGGAAC GCGCCTTGCT CCTGGCGTAC CGGCAGGCCA AACACCGGAT GCGGATACCG
GCTGGCGGCG CACAGTTTCC GCTTGATCTC GATGCCGGGT CCGGCATCGA GATCAAGCAC
GATACTCGGC TGGTTTTGCA GGAGAAGGCC GCTGAACTGA TCGCAGCGGG CCGGCCGACC
GCCATCGAGG TATCCCTGCC GCACGGTCAG ACTGCCACGC TGGTGTGCAG GGAGGTACGG
ACGCACTCCG CAGTGGCCGG GCTGGCCGTC GAGGTCGTCC TTCCCTTCGG GCCGCCCCGT
CGCCTCATGA CCAGCGCCGC GGCTGTGGCA GGACACCTCA ACAGCCAGCC GCGGGGGGCC
GACGCCGGTG CCCCGTCGGC GCCGGGGCTT TTCCTGCCGT ATGCCGCGCT CAGCGCGCCC
AGGCCGACGC CGCGACTGCC GGCGGGTGCA CCCGACGCCA CCCGCCCGGC CAGCACACCC
GTGGCCAGTG CGTACCCGGC CAGCCGGCAG CCCGCCATCG GCGCGTCACT GCTGGCGATC
GGGGAACAGG GAATCGGCCG TCTCGCGGTG GCGGCACGGC GACGCCTCAC CCTGCTGTAC
GAGGCCAGTA TGCACATCGG GACCACCCTC GACGTGACTC GGACCGCCGA GGAACTGGCC
CAGGCAGCCG TGCCCGAACT CGCCGACGTC GTCACGGTGG ACCTGTCGGA GTCTGTTCTG
CGGGGCGAGG ACTCGCTGCG TCCGACCGCA CTGCTGCGCC GCGCCGCCCT GCACGGCATC
CAGGAAGGCC TCGCTCTCTA CCCGGCCGGT CACCAGATCA GCTTCCTGCC CTCCACGCCG
CAGGCTCGGT GCCTGGCCAG CGGGCGAGCG GTGCTCGAGG CCGACCTGCA CGCGGCTCCC
GGTTGGCAGG CCCAGGACCC CGAACGCGTC GAGCAACTCC TCGCGCAGGG GATCCACTCG
CTCATCACCG TCCCCCTGTG CGCCCGCGAC GTGATGTTCG GGGTGGCCAG TTTCTGCCGC
TCCCGGCAAC CAGAGCCCTA CGAGGACGAC GACCTGGCCC TGGCCGAGGA GTTGGCCGCC
CGCGCGGCGC TGTGCCTGGA CAACGCCCAC CGCTACACCC GCGAACGACA GCTGCACCAC
CAGGCCCTGC ACGATCCGCT GACCGACCTG GCGAACCGCA CGCTGTTGAC GGCCCGACTG
CAACGCGGAC TTGCCCGGCG CCTCCACGAC AATACGCAGG ACGACACGCA GCTTGCACTA
CTGTTCTGCG ACCTCGACGA CTTCAAGAGC GTCAACGACA GATTCGGGCA CGCGGCCGGC
GACGACCTGC TTCGCGTAAC CGCGGGTCGG CTGACGAGTT GCGCCCGTAG CACCGACACG
GTTGCCCGCA TCAGCGGCGA CGAGTTCGCG GTCCTGCTGG AAGGCGGCTG CGTCGACCCC
GAGTCCATCG GGCGGCGGAT CCTGGAAACA CTCCGCGTAC CCTTGGTACT CGCCGGAACG
GTTCATACAA CCCAGGCCAG CATTGGGCTG GTCGTTGTCG ACCCCGGCAC TCAGGCCACC
GCGGAAAGCG TGCTGAAACA GGCGGACTCC GCCATGTACG CCGCAAAACG GCGGGGTAAG
GGCACCCTGG TGGTGTACCG GCCGGAGCTG TGCCCCGCCA GCGCCGAGGA CGCCCTGCGC
ACCAGCCTCA CCCACGCCGT ACGCGGCGAG GATGGCGGCG GTACCCTCAA CGTCAGCTAT
CAGCCGATCA TCGAGCTCCA CACCGGTCGG ACCGTCGGTG TCGAGGCGGC GCTTCGGTGG
GACGACCCGT CCTCCCGATC CGTTCCCCAC CACCGTCTCA CCCTCACCGC CCAGCAGACC
GGGCTGGCCC CCGCACTGGA GCACATCCTG CTCGACCGGG CCTGCCGTGA CCTCGGCCGA
TACCGAAGCA CGGGCCATCC GGAGGTGGCC CTCCACATCC CCGTCTCGAT CCTCGATGCC
GCTGACGCCC GGTTCACGAC CGAGGTGGTC AATGCTCTGA CCGTCCACCA CCTGCCACCC
GATGCTCTCG TGCTCCGCGT CGCCGGCGCG ACGCACCACA CCGATCAGGC TGCCCTGCGG
GCGCTGCGCG GACTGGCCGC ACGAGGTATC AGGCTCGCGA TCACCTATCC CGACGCCGAG
GACCTCTCGT TCGATCCCCT TCTGCCGCTT CCCGTCCAGA TCATCGTGCT CGACGCCGCC
GCCACCCGGC ACCTGACCGA ATCGCTGACC GACGGCCGCA CCCCCGGGGA AGAAGAAAAC
GACGGCACGC TGCGCACGGC GTTCCTCGCC ACCATCCGCG GACTGGGCAT TTCACTGCTG
GGCACCGGCA TCGCTGACGC GAAGCAGGCC GCCACCCTCG CGCACAGCGG CTGCGGCCTT
GGCCAGGGCA GCCTCTTCGG CGGACCCGCA CCGCTCGCCG ACATCCCCGG CAGGTATCCG
ACATGA
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| Protein sequence | MDIWDDLAQR NSAHLRERFL TGDLVAEGPQ NAILGSWWRS QVLNVSPDRC SPVYDPDLDL
DTRLVRAADP VLDRLASMIA GTWVCVCLTD DQARILAHRV GEASFGLHPG FCVAEHLVGT
SAVALALVER RPARVSGAEH FADLYQPDAC ISAPVRDPLS GRIEGVFSLI CRLAEANPSA
EAMVGEAGRA IEHRLLEQAS ERERALLLAY RQAKHRMRIP AGGAQFPLDL DAGSGIEIKH
DTRLVLQEKA AELIAAGRPT AIEVSLPHGQ TATLVCREVR THSAVAGLAV EVVLPFGPPR
RLMTSAAAVA GHLNSQPRGA DAGAPSAPGL FLPYAALSAP RPTPRLPAGA PDATRPASTP
VASAYPASRQ PAIGASLLAI GEQGIGRLAV AARRRLTLLY EASMHIGTTL DVTRTAEELA
QAAVPELADV VTVDLSESVL RGEDSLRPTA LLRRAALHGI QEGLALYPAG HQISFLPSTP
QARCLASGRA VLEADLHAAP GWQAQDPERV EQLLAQGIHS LITVPLCARD VMFGVASFCR
SRQPEPYEDD DLALAEELAA RAALCLDNAH RYTRERQLHH QALHDPLTDL ANRTLLTARL
QRGLARRLHD NTQDDTQLAL LFCDLDDFKS VNDRFGHAAG DDLLRVTAGR LTSCARSTDT
VARISGDEFA VLLEGGCVDP ESIGRRILET LRVPLVLAGT VHTTQASIGL VVVDPGTQAT
AESVLKQADS AMYAAKRRGK GTLVVYRPEL CPASAEDALR TSLTHAVRGE DGGGTLNVSY
QPIIELHTGR TVGVEAALRW DDPSSRSVPH HRLTLTAQQT GLAPALEHIL LDRACRDLGR
YRSTGHPEVA LHIPVSILDA ADARFTTEVV NALTVHHLPP DALVLRVAGA THHTDQAALR
ALRGLAARGI RLAITYPDAE DLSFDPLLPL PVQIIVLDAA ATRHLTESLT DGRTPGEEEN
DGTLRTAFLA TIRGLGISLL GTGIADAKQA ATLAHSGCGL GQGSLFGGPA PLADIPGRYP
T
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