| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0367 |
|---|
| Symbol | |
|---|
| ID | 3905426 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 427896 |
|---|
| End bp | 428657 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637877696 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_479483 |
|---|
| Protein GI | 86739083 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.228313 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGTAT TGGACCGTTT CCGATTGGAC GGTCGGGTCG CCGTCGTCAC CGGGGCGTCC
TCTGGTCTCG GGGTGGACTT CGCCCGGGGC CTGGCCGAGG CCGGCGCGGA CGTGGCCCTG
GGCGCCCGCC GGGTCGACCG GCTCACCGCC ACCGCCGAGT TCGTGGAGAA GGAGGGCCGC
CGCGCCCTGC CCGTCGCCAC CGACGTCACC GACCCCGCCT CCTGCGAACA CCTTGTCGCC
GCCGCGATGG AGACCTTCGG CCGGGTCGAC ATCCTGGTCA ACAACGCCGG GATCGGCACC
GCCGTCCCCG CGCTCAAGGA GACCCCGCAA CAGTTCCGCT CCGTCATCGA CGTCAACCTG
GGCGGCTGCT ACTGGATGGC GCAGGCGACG GCGCGGGTCA TGCGACCCGG CAGCAGCATC
GTTAACATCT CCAGCGTTCT CGGTCTGACG ACCGCCGGCC TGCCGCAGGC GGCCTACGCG
GCGAGCAAGG CCGCACTCGT CGGCCTCACC CGCGATCTGG CCCAGCAATG GACCGGCCGA
CGCGGCATCC GGGTGAACGC GCTGGCGCCG GGTTTCTTCC ACTCTGAGAT GACCGACGCG
TACCAGCCCG AGTACCTCGA GACCCAGTTG CCGAGGGTCC TCGGCGGACG CTTCGGTGAA
CCGGAGGAAC TGACCGCGGC GCTGCTCTTC CTGGCCTCCG ACGCCGGCAG TTTCGTCACC
GGGCAGACCC TTGCCGTCGA CGGCGGTTTC ACCATCACCT GA
|
|---|
| Protein sequence | MSVLDRFRLD GRVAVVTGAS SGLGVDFARG LAEAGADVAL GARRVDRLTA TAEFVEKEGR
RALPVATDVT DPASCEHLVA AAMETFGRVD ILVNNAGIGT AVPALKETPQ QFRSVIDVNL
GGCYWMAQAT ARVMRPGSSI VNISSVLGLT TAGLPQAAYA ASKAALVGLT RDLAQQWTGR
RGIRVNALAP GFFHSEMTDA YQPEYLETQL PRVLGGRFGE PEELTAALLF LASDAGSFVT
GQTLAVDGGF TIT
|
|---|
| |