| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0244 |
|---|
| Symbol | |
|---|
| ID | 3903652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 283431 |
|---|
| End bp | 284636 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 637877572 |
|---|
| Product | putative sigma factor |
|---|
| Protein accession | YP_479361 |
|---|
| Protein GI | 86738961 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTCGAG GTGCGCCCGT TCCTGACCTC ACCGCCCACC ATCACAGAGT GACCTCTCAG
ATAAACGAGG CCCTGCTCCG GAGCCTCACC CCGAGCGTGC TAGGGATCCT CGTCCGCCGC
GGAGCCGACT TCGCGGCGGC CGAGGACGCC ATGCAGGACG CGCTGGTCGA GGCGGTCCGC
GTCTGGCCGG CCGACCCGCC GCGGGACCCG AAGGGCTGGC TGGTCACCGT GGCCTGGCGC
CGGTTCCTCG ACGCGACCCG GGCGGACGCC GCCCGCCGCC GGCGTGAGGA CCTCGTCAAC
GAGGAGCCGG CGCCCGGGCC CGCGCCCACG GTGGACGACA CGCTCCAGCT CTACTTCCTG
TGCGCCCACC CCTCGCTGAC GCCGTCGTCC GCGGTCGCGC TCACGCTGCG CGCCGTCGGC
GGGCTGACCA CCCGCCAGAT CGCCCAGGCC TACCTGGTGC CCGAGGCGAC CATGGCGCAG
CGCATCAGCC GTGCCAAGCG CACCATCTCC GGCGTGCGGT TCGGCCAGCC CGGCGACGTC
GCCACCGTGC TGCGCGTCCT CTACTTGGTC TTCAACGAGG GCTACTCCGG CGACGTCGAC
CTTGCCGCCG AGTCCATCCG GCTCACCCGG CAGCTCGCGG CCGCGGTCGA CCATCCCGAG
GTGGCGGGGC TGCTCGCCCT CATGCTGCTC CACCACGCCC GGCGCGTCAC CCGGACCGCG
CCCAACGGCA GCCTGGTGCC GCTCGCCGAG CAGGACCGCA GCCGGTGGGA CACTGAGCTG
ATCGCCGAGG GCGTCAAGAT CCTGCAGGCG GCCCTCGCCC GCGACCGGCT GGGCGAGTTC
CAGGCCCAGG CCGCCATCGC GGCACTCCAC GCTGACGCGC CCACCGCCGA GGAGACTGAC
TGGGTCCAGA TCGTCGAGTG GTACGACGAG CTCGCGCGTC TGACCGACAG CCCGGTCGTC
CGGCTCAACC GCGCAGTGGC CGTCGGCGAG GCCGACGGAC CGCGCGCCGG GCTGGCGGCG
CTCGCGGCGC TGAACGACTC ACTGCCCCGC CACGCCGCGG TGGCGGCGTA CCTCCACGAG
CGCGACGGCG ACCTGGCGAC GGCGGCACGG CTGTACGCCG AGGCGGCCCA CAAGGCACCC
AACCTCGCCG AGCGCGATTA CCTGACGCGC CAGGCCGCCC GGCTCAACGC CCGCCGGTGT
CGCTGA
|
|---|
| Protein sequence | MARGAPVPDL TAHHHRVTSQ INEALLRSLT PSVLGILVRR GADFAAAEDA MQDALVEAVR
VWPADPPRDP KGWLVTVAWR RFLDATRADA ARRRREDLVN EEPAPGPAPT VDDTLQLYFL
CAHPSLTPSS AVALTLRAVG GLTTRQIAQA YLVPEATMAQ RISRAKRTIS GVRFGQPGDV
ATVLRVLYLV FNEGYSGDVD LAAESIRLTR QLAAAVDHPE VAGLLALMLL HHARRVTRTA
PNGSLVPLAE QDRSRWDTEL IAEGVKILQA ALARDRLGEF QAQAAIAALH ADAPTAEETD
WVQIVEWYDE LARLTDSPVV RLNRAVAVGE ADGPRAGLAA LAALNDSLPR HAAVAAYLHE
RDGDLATAAR LYAEAAHKAP NLAERDYLTR QAARLNARRC R
|
|---|
| |